Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0577000-02
CDS Infomation

cds chromosome:IRGSP-1.0:10:22986883:22989866:-1 gene:Os10g0577000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os10t0577000-01);NERD domain containing protein. (Os10t0577000-02)
Sequence

ATGTGGGTGGAGATTCTGTGCGGGCTGTTGGCGTACAAGATCATCCGCCGCGTCTTCTTC
GCCGACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCGCCCACTCCGACCTCTGC
TTCGCCCTCGCCTCCAGGCTCGAGAAGCTCTACTCCGCCCGCTGCTTCGTCGGCCTCCGC
ATCCCCGACCCCGACGCCGGCGAGCGCCAGCATGTCGACCTCGTCCTCCTTACCAACAGG
GAGGTCATGGTAGTGGCTATCCACAACATTTCTGGTTTTGTTGAGGTCGATAAGGATGGC
AACTGGACTTGCCCCAGTGATAAGAAGAACAAGCATGGTGTTATCCCAAACCCGGTACTG
CAAGTCAATAGACTGGCTGCCAATCTTCAATCGTACTTGGAGAAGAGGGGAGCAAAACTG
CCTGATGGTCATATAACTGGAAAGATTGTACTGCCAAATCCCAACTGCAGGCCTTCCTAT
GCCATCACTCTTCAACCAGAAGTTATCTTGTACGATCAATGGAAAGATCTTAAAGCAGAT
TCCAAAGGTGGACTTTCAACATGGATTAAAGGTGCATTCAGTGGAAGCAAAGGTGACATG
CAAGATTCGTTACTCCAAAATCTACATTTCATTCTCAGCACGTCGCCTATGTGGGACAGG
TTGGAACTCAAAGGGGACAGGAATATTCTTGGTGAATTCATTGAATTCAAAGGCAGGCAC
GATGATATTCAGGCCTTGAAATGTCTGAAGAGATCAAAAGTTTGCCGATTCATAGTCCAG
AAATCAACTCTGTTTGGAGGTTTTGGTCGGTCAAGAGTGCAAATATTGTATTCACCACGA
GATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCAGTGAAACAATAT
ACAGAAATTCTTTTTCAGCCATTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGTCAAGT
GTTGCTTCTGTGACACTGAGTGCCTAG

Peptide Sequence

PEP ID

Os10t0577000-02
PEP Infomation

pep chromosome:IRGSP-1.0:10:22986883:22989866:-1 gene:Os10g0577000 transcript:Os10t0577000-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os10t0577000-01);NERD domain containing protein. (Os10t0577000-02)
Sequence

MWVEILCGLLAYKIIRRVFFADSDDPAHLADLDSAHSDLCFALASRLEKLYSARCFVGLR
IPDPDAGERQHVDLVLLTNREVMVVAIHNISGFVEVDKDGNWTCPSDKKNKHGVIPNPVL
QVNRLAANLQSYLEKRGAKLPDGHITGKIVLPNPNCRPSYAITLQPEVILYDQWKDLKAD
SKGGLSTWIKGAFSGSKGDMQDSLLQNLHFILSTSPMWDRLELKGDRNILGEFIEFKGRH
DDIQALKCLKRSKVCRFIVQKSTLFGGFGRSRVQILYSPRDYRAEGTSSSEWKEISVKQY
TEILFQPLHSKKVKKFKLSSVASVTLSA

Transcript Sequence

Transcript ID

Os10t0577000-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:22986883:22989866:-1 gene:Os10g0577000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os10t0577000-01);NERD domain containing protein. (Os10t0577000-02)
Sequence

ATTCCTTTCCTCCTGCGAGTGCGAGTGCGATCCGGGGCAAGGCAAATCCGATTCCGAGCT
CAGAGGCATCAGGCGTCGAGTTCGTCGATCGATCGCTGCAGAGAAGCAGAGAGAGATCGA
GAGAGATGTGGGTGGAGATTCTGTGCGGGCTGTTGGCGTACAAGATCATCCGCCGCGTCT
TCTTCGCCGACTCCGACGACCCCGCGCACCTCGCCGACCTCGATTCCGCCCACTCCGACC
TCTGCTTCGCCCTCGCCTCCAGGCTCGAGAAGCTCTACTCCGCCCGCTGCTTCGTCGGCC
TCCGCATCCCCGACCCCGACGCCGGCGAGCGCCAGCATGTCGACCTCGTCCTCCTTACCA
ACAGGGAGGTCATGGTAGTGGCTATCCACAACATTTCTGGTTTTGTTGAGGTCGATAAGG
ATGGCAACTGGACTTGCCCCAGTGATAAGAAGAACAAGCATGGTGTTATCCCAAACCCGG
TACTGCAAGTCAATAGACTGGCTGCCAATCTTCAATCGTACTTGGAGAAGAGGGGAGCAA
AACTGCCTGATGGTCATATAACTGGAAAGATTGTACTGCCAAATCCCAACTGCAGGCCTT
CCTATGCCATCACTCTTCAACCAGAAGTTATCTTGTACGATCAATGGAAAGATCTTAAAG
CAGATTCCAAAGGTGGACTTTCAACATGGATTAAAGGTGCATTCAGTGGAAGCAAAGGTG
ACATGCAAGATTCGTTACTCCAAAATCTACATTTCATTCTCAGCACGTCGCCTATGTGGG
ACAGGTTGGAACTCAAAGGGGACAGGAATATTCTTGGTGAATTCATTGAATTCAAAGGCA
GGCACGATGATATTCAGGCCTTGAAATGTCTGAAGAGATCAAAAGTTTGCCGATTCATAG
TCCAGAAATCAACTCTGTTTGGAGGTTTTGGTCGGTCAAGAGTGCAAATATTGTATTCAC
CACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCAGTGAAAC
AATATACAGAAATTCTTTTTCAGCCATTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGT
CAAGTGTTGCTTCTGTGACACTGAGTGCCTAGTGAGTTGAAATTTTATCCACGGGGTACT
TCCTGTTGCAGTAGTATATAGAGTACCTTCCTGGCTTCTGTATGTGCTCCTCAGTTAAAG
TTTGTCTTGTTGTTTCTGTACACCAACCTGTACTTACTTTAAGATGTCAGTTAGCATGAA
ATTAGAAAAAAATGAATGATTTG