Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0573900-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:22782354:22784358:-1 gene:Os10g0573900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:60S ribosomal subunit nuclear export adaptor NMD3 description:NMD3 family protein. (Os10t0573900-01);Similar to Nonsense-mediated mRNA decay protein 3. (Os10t0573900-03)
Sequence

ATGCTGCCGGGGTCGGCGGCGCCGGCGGCTGGGAGCGGCATGTTCGTGCCAACGCAGACG
GTGGGCACGGTGCTGTGCTGCATCTGCGGCGTGGCGATGCAGCCCAACCCGGCCAACATG
TGCGCGCGCTGCATCCGCGCCCGCGTCGACATCACCGAGGGCGTCCCGCGCCACGCCGCC
GTCGTCTACTGCCCCGACTGCACCTCCTACCTCCAGCCGCCGCGCTCCTGGCTCCGCGCC
GGCCCGGAGTCCCCCGAGCTCATGCAGATCCTCCTCCGCCGCCTCAACCGCCCCCTCGCC
CGCCTCCGCGTCTCCCTCTCCGCCGCCGAGTTCGTCTTCTCCGAGCCCCACTCCAAGCGC
CTCCGCCTCAAGCTCCGCCTCCGCCGCGAGGTCTTCAACGCCGTCGTCCTCGAGCAGACC
CACCCCGTCGAGTTCACCGTCCACGATCGCCTCTGCGATGCCTGCGCCCGCGCCCAGTCC
AACCCCGACCAGTGGGTCGCCGTCGTCCAGCTCCGCCAGCACGTCCCGCACCGCCGCACC
TTCCTCTACCTCGAGCAGCTCCTCCTCAAGCACGGCCAGGCCTCCCTCGCCCTCCGCGTC
GCCGCCGCCCCCGGCGGCCTCGACTTCTTCTTCGGCTCCCGCTCGCACGCCGCCCGCCTC
GTCGACTTCCTCGCCACCGTCGCCCCCGTCCAGACCCAGACCGCCAAGCAGCTCGTCTCC
CACGACACCAAGAGCAACGTCTACAACTACAAGCACACCTTCTCCGTCGAGATCTGCCCC
ATCTGCCGGGAGGACCTCATCGCCCTTAGCCCTCAGGTGTCCCGCGATCTTGGAGGCCTT
GGACCTATCGTCCTCTGCATCAAGGTCACCAATGCCATCGCTCTGCTTGACCCCCTCACC
CTGCGTGTGCACCACCTCGAGGAAAAGAAGTACAGGGTCTACAACTTCAAGGCTGCTCTC
ACCAGCAAGCAGCTCGTCGAGTACATCGTGCTAGACATCGAGCACGAGTCACCAGAGATT
ACCATTGACGGATCTCGCTACCAGTTGGCTTATGCCCAGGTCGCCCGGGTCTCCGACTTT
GGGAAAAACGACACCATGTTCACCGTGCGGACTCATCTTGGCCACCTGCTGAATCCTGGA
GACCTTGCCCTTGGGTATGATCTTTATGGTGCCAACTTGAATGATGATGACATGGACACA
GCTATGATGCGCCACAGTCTGCCTGAAGTCATTCTTGTTAAGAAGAGCTTCGCCAAGAGG
CCACGCACACGCCGATGGAAGCTGAAGAGGCTTCCAATGGAGGAAGATGCTGTAAATAAG
GCCAAGGGGGAGCTAGAGAAGAGGGCTGATGAGTATGAGGAGTTTCTCAGGGACTTGGAG
CACAACTCTGATATTAGATTCCAGATTGATCTATACAAGGATGAGGACTACAGGTCGGAG
ATGGCATCTACTATTGGTGATGATGTTCCCACTGTGCCGATTGAGGAACTAATTGAGGAC
CTAAGTCTTGGTGATGATGAGGAGGAGGATGAAGGTGGGGAAGGCAACCAACATGCTGTT
ATGGTGGGATGA

Peptide Sequence

PEP ID

Os10t0573900-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:22782354:22784358:-1 gene:Os10g0573900 transcript:Os10t0573900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:60S ribosomal subunit nuclear export adaptor NMD3 description:NMD3 family protein. (Os10t0573900-01);Similar to Nonsense-mediated mRNA decay protein 3. (Os10t0573900-03)
Sequence

MLPGSAAPAAGSGMFVPTQTVGTVLCCICGVAMQPNPANMCARCIRARVDITEGVPRHAA
VVYCPDCTSYLQPPRSWLRAGPESPELMQILLRRLNRPLARLRVSLSAAEFVFSEPHSKR
LRLKLRLRREVFNAVVLEQTHPVEFTVHDRLCDACARAQSNPDQWVAVVQLRQHVPHRRT
FLYLEQLLLKHGQASLALRVAAAPGGLDFFFGSRSHAARLVDFLATVAPVQTQTAKQLVS
HDTKSNVYNYKHTFSVEICPICREDLIALSPQVSRDLGGLGPIVLCIKVTNAIALLDPLT
LRVHHLEEKKYRVYNFKAALTSKQLVEYIVLDIEHESPEITIDGSRYQLAYAQVARVSDF
GKNDTMFTVRTHLGHLLNPGDLALGYDLYGANLNDDDMDTAMMRHSLPEVILVKKSFAKR
PRTRRWKLKRLPMEEDAVNKAKGELEKRADEYEEFLRDLEHNSDIRFQIDLYKDEDYRSE
MASTIGDDVPTVPIEELIEDLSLGDDEEEDEGGEGNQHAVMVG

Transcript Sequence

Transcript ID

Os10t0573900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:22782354:22784358:-1 gene:Os10g0573900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:60S ribosomal subunit nuclear export adaptor NMD3 description:NMD3 family protein. (Os10t0573900-01);Similar to Nonsense-mediated mRNA decay protein 3. (Os10t0573900-03)
Sequence

GAGATCCCCCAATCCACTCGATTCGATCCAATCCGGCGAGGTACAGGATGCTGCCGGGGT
CGGCGGCGCCGGCGGCTGGGAGCGGCATGTTCGTGCCAACGCAGACGGTGGGCACGGTGC
TGTGCTGCATCTGCGGCGTGGCGATGCAGCCCAACCCGGCCAACATGTGCGCGCGCTGCA
TCCGCGCCCGCGTCGACATCACCGAGGGCGTCCCGCGCCACGCCGCCGTCGTCTACTGCC
CCGACTGCACCTCCTACCTCCAGCCGCCGCGCTCCTGGCTCCGCGCCGGCCCGGAGTCCC
CCGAGCTCATGCAGATCCTCCTCCGCCGCCTCAACCGCCCCCTCGCCCGCCTCCGCGTCT
CCCTCTCCGCCGCCGAGTTCGTCTTCTCCGAGCCCCACTCCAAGCGCCTCCGCCTCAAGC
TCCGCCTCCGCCGCGAGGTCTTCAACGCCGTCGTCCTCGAGCAGACCCACCCCGTCGAGT
TCACCGTCCACGATCGCCTCTGCGATGCCTGCGCCCGCGCCCAGTCCAACCCCGACCAGT
GGGTCGCCGTCGTCCAGCTCCGCCAGCACGTCCCGCACCGCCGCACCTTCCTCTACCTCG
AGCAGCTCCTCCTCAAGCACGGCCAGGCCTCCCTCGCCCTCCGCGTCGCCGCCGCCCCCG
GCGGCCTCGACTTCTTCTTCGGCTCCCGCTCGCACGCCGCCCGCCTCGTCGACTTCCTCG
CCACCGTCGCCCCCGTCCAGACCCAGACCGCCAAGCAGCTCGTCTCCCACGACACCAAGA
GCAACGTCTACAACTACAAGCACACCTTCTCCGTCGAGATCTGCCCCATCTGCCGGGAGG
ACCTCATCGCCCTTAGCCCTCAGGTGTCCCGCGATCTTGGAGGCCTTGGACCTATCGTCC
TCTGCATCAAGGTCACCAATGCCATCGCTCTGCTTGACCCCCTCACCCTGCGTGTGCACC
ACCTCGAGGAAAAGAAGTACAGGGTCTACAACTTCAAGGCTGCTCTCACCAGCAAGCAGC
TCGTCGAGTACATCGTGCTAGACATCGAGCACGAGTCACCAGAGATTACCATTGACGGAT
CTCGCTACCAGTTGGCTTATGCCCAGGTCGCCCGGGTCTCCGACTTTGGGAAAAACGACA
CCATGTTCACCGTGCGGACTCATCTTGGCCACCTGCTGAATCCTGGAGACCTTGCCCTTG
GGTATGATCTTTATGGTGCCAACTTGAATGATGATGACATGGACACAGCTATGATGCGCC
ACAGTCTGCCTGAAGTCATTCTTGTTAAGAAGAGCTTCGCCAAGAGGCCACGCACACGCC
GATGGAAGCTGAAGAGGCTTCCAATGGAGGAAGATGCTGTAAATAAGGCCAAGGGGGAGC
TAGAGAAGAGGGCTGATGAGTATGAGGAGTTTCTCAGGGACTTGGAGCACAACTCTGATA
TTAGATTCCAGATTGATCTATACAAGGATGAGGACTACAGGTCGGAGATGGCATCTACTA
TTGGTGATGATGTTCCCACTGTGCCGATTGAGGAACTAATTGAGGACCTAAGTCTTGGTG
ATGATGAGGAGGAGGATGAAGGTGGGGAAGGCAACCAACATGCTGTTATGGTGGGATGAG
TTAATATGTTTACCTGTGCTGTGCTTCTGCCTTCTGGTGATGGTTGCTGCCAACCGCAGA
TCATAGGTCTGAACTGCATCTGTTTAATCCGTATAAGTTTTGTTCTCCCCTTTACTTCTA
TAAGTTATAAGTTTTGTTGCTAAATTGTTTCAACTTTTGCTGTTTCTCATGATAGATGTT
GTATCACCTTATCCTGTATCTGGTGTTGCAGCTTGGCTTAAATTATATTTCTCTATTCTT
ATTGTCTGTGATATGTTGTTTTCTTGCCATAGTGTGGCTGATCACAACATATCTTAAAAT
AGATGCATTGTTTGATTTCCAAAACATCTAGTTTGGTGTTTAGATTGTGCCAGATTCATA
TTTTTACTATATGTTTTTAGTCCCC