Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0567500-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:22489255:22492032:1 gene:Os10g0567500 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNA-directed DNA polymerase (reverse transcriptase) domain containing protein. (Os10t0567500-01)
Sequence

ATGCCTCCGCCTCCGCCTCGCCGCGCGCTCCTCGCCCCCCTCCTCCGCCTCCGCGCCTTC
TCCTCCTCCTCCTCCTCCCTCGCCCACCACCCCCCGTTGCCGCCTCCCCCGCGCCGCCAC
CAGTTCGTCGCCGCCGACGCCATCACCGGCCAGGGCGGCGGCGGCAATCCACTGGACCCG
GCGCAGCTCCTCCGCGACGATCCGGTCGCCATAACCGCATCGCTGTGGGTCTCCTCCTTC
CGCCCGCAGCCGACCGCCGCAGCGCCACCGCCGCCGTCGCTGTCGCCGTTCCTGTCGCGC
CTCGAGCTCTGGGTGCTCGCGTACCAGAAGGCCTACGCCGACGAGACGGGCTCCTACCTG
CCCCGCTCCTCCATCCCGGCCTCCACGCTCTCCTCCCTCCTCGCGCTCCGCAACGCCGTC
CTCGACGCCCGCTTCCGCTTCGGCAACCGCCTCACCCCCTTCCTCCGCTCCCCGCGCGCC
GCCGCCGCGGCGCAGGACCCCGCCACGCTCTCCAAGCGCAAGCTCCGCGCCCTCCTCACC
ACCCCGGGGCCGGCCCCGTTCCAGGACCGCGTCGTGCAGGAGCTCCTCCTCCTCCTGCTC
GAGCCCGTCTACGAGGCGAGGTTCTCACCCAAGTCCTTCGCCTTTCGCCCCGGCCGATCT
CCGCACGCCGCCATCCGCACCATCCGCCGCAGCTTCGCGCCCTACCTCTGGTACATCAAG
GGTGACCTCTCCCCGCTCCTCCACTCCCCGGACCCTGCCCTGGTCGTCGGCGCGCTTATC
CGCGATGTGCGCGACAAGAAGGTCGTTGATTTGGTTCGTTCGGCATTGCTCACCCCACCT
GTGACCGCGAGGCCCGGCGATGAAGATGCGGCGAAGAAGAAGAAGAAGAGGAAGTACCAG
AAGAAGAAGGTGCTTCCAGAGGGAGAGCCGAAGCCTGACCCCTACTGGTTACAGACATTC
TTTGGGTTTGCGCCGGAGGAGGCACTCACCCAGCCTGATTGGGGGCATTGTGGAGTGCTG
AGCCCATTGCTTGCCAATGTGTGCTTAGATGAGCTTGATAAATGGATGGAGGAGAAGATT
AAGGAATTGTACAGGCCGTCCAAGTCGGATGTTGTGGGAGGGGAGGATGGAGTTGAGCAG
GGGAACACTTCATGGCCAGAGTTTGTCCCCACGAGCGGCCCTGACAAAACGAGGAAGGTG
GACTACATTCGATTCGGTGGCCATTTCTTAATCGGGGTGAGGGGTCCGAGGGCAGATGCA
GCAGTGCTCCGAAAACAGCTTGTTGAATTCTGCGACCAGCGGTTCAGGATCAAGCTTGAC
AACGAGAGCCTCCCGATCGAGCATATCACTAAAGGGATCATGTTCCTTGATCATGTGCTG
TGTCGTCGTGTTGTGTACCCGACTCTCCGTTACACAGCCACTGGAGGCAAGATCATCAGC
GAGAAGGGGGTTGGGACTCTGCTCTCTGTGACAGCCAGTTTGAAGCAGTGCATCAAGCAG
TTCCGGAAGCTTGAGTTTTTAAAGGGGGACCGTGAACCAGACCCACAACCGTGCTTCAGG
ATGTTCCATGCCACACAAGCTCACACAAACGCGCAGATGAATAAGCTCTTGCTGACAATG
GCAGAATGGTATCGTTATGCTGATAACCGCAAGAAGGTTGTCAACTTCTGCTCATACATT
ATAAGGGGGTCCTTGGCAAAGTTATATGCTGCCAAATACAAATTGAGGTCGAGGGCAAAG
GTCTACAAGATTGCTTCAAGGAATCTTAGTCGACCATTGAAGGATAAGAAAGGGCAGTCG
CCGGAGTACCACAATCTGCTGAGAATGGGTCTTGTGGACTCAATTGATGGACTTCAGTAT
ACACGGATGTCGATGGTTCCTGATCCTGATTACACACCATTACCAAGTGGATGGCGCCCT
GACCATGAAAAGATTTTGCTGGAGTATATAAAGCTCACAGATCAACAAACCCTGGATGAG
CAGCGAAGCTGCATTAGGGAGGAAGGACTTATAACTCCACAGGACTACATTTCAATGCTT
GTATGGAGCTACAAGAAAAATGCAGTTTTACTACCTTCGTTCAAAGAGAATGATCACAAA
GGATCCACAGAGGACTTGGGTTCAGATACAGATGAATTGGGTGATGAGGAAATAGGAAAT
CTGGACCATGTCGATTCCCCAAAGGTTGCTGAAATGCCATGA

Peptide Sequence

PEP ID

Os10t0567500-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:22489255:22492032:1 gene:Os10g0567500 transcript:Os10t0567500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNA-directed DNA polymerase (reverse transcriptase) domain containing protein. (Os10t0567500-01)
Sequence

MPPPPPRRALLAPLLRLRAFSSSSSSLAHHPPLPPPPRRHQFVAADAITGQGGGGNPLDP
AQLLRDDPVAITASLWVSSFRPQPTAAAPPPPSLSPFLSRLELWVLAYQKAYADETGSYL
PRSSIPASTLSSLLALRNAVLDARFRFGNRLTPFLRSPRAAAAAQDPATLSKRKLRALLT
TPGPAPFQDRVVQELLLLLLEPVYEARFSPKSFAFRPGRSPHAAIRTIRRSFAPYLWYIK
GDLSPLLHSPDPALVVGALIRDVRDKKVVDLVRSALLTPPVTARPGDEDAAKKKKKRKYQ
KKKVLPEGEPKPDPYWLQTFFGFAPEEALTQPDWGHCGVLSPLLANVCLDELDKWMEEKI
KELYRPSKSDVVGGEDGVEQGNTSWPEFVPTSGPDKTRKVDYIRFGGHFLIGVRGPRADA
AVLRKQLVEFCDQRFRIKLDNESLPIEHITKGIMFLDHVLCRRVVYPTLRYTATGGKIIS
EKGVGTLLSVTASLKQCIKQFRKLEFLKGDREPDPQPCFRMFHATQAHTNAQMNKLLLTM
AEWYRYADNRKKVVNFCSYIIRGSLAKLYAAKYKLRSRAKVYKIASRNLSRPLKDKKGQS
PEYHNLLRMGLVDSIDGLQYTRMSMVPDPDYTPLPSGWRPDHEKILLEYIKLTDQQTLDE
QRSCIREEGLITPQDYISMLVWSYKKNAVLLPSFKENDHKGSTEDLGSDTDELGDEEIGN
LDHVDSPKVAEMP

Transcript Sequence

Transcript ID

Os10t0567500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:22489255:22492032:1 gene:Os10g0567500 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNA-directed DNA polymerase (reverse transcriptase) domain containing protein. (Os10t0567500-01)
Sequence

GGCCACCGCGAGGGTTTAGCTTTCCTTCTCCTCCCCGATGCCTCCGCCTCCGCCTCGCCG
CGCGCTCCTCGCCCCCCTCCTCCGCCTCCGCGCCTTCTCCTCCTCCTCCTCCTCCCTCGC
CCACCACCCCCCGTTGCCGCCTCCCCCGCGCCGCCACCAGTTCGTCGCCGCCGACGCCAT
CACCGGCCAGGGCGGCGGCGGCAATCCACTGGACCCGGCGCAGCTCCTCCGCGACGATCC
GGTCGCCATAACCGCATCGCTGTGGGTCTCCTCCTTCCGCCCGCAGCCGACCGCCGCAGC
GCCACCGCCGCCGTCGCTGTCGCCGTTCCTGTCGCGCCTCGAGCTCTGGGTGCTCGCGTA
CCAGAAGGCCTACGCCGACGAGACGGGCTCCTACCTGCCCCGCTCCTCCATCCCGGCCTC
CACGCTCTCCTCCCTCCTCGCGCTCCGCAACGCCGTCCTCGACGCCCGCTTCCGCTTCGG
CAACCGCCTCACCCCCTTCCTCCGCTCCCCGCGCGCCGCCGCCGCGGCGCAGGACCCCGC
CACGCTCTCCAAGCGCAAGCTCCGCGCCCTCCTCACCACCCCGGGGCCGGCCCCGTTCCA
GGACCGCGTCGTGCAGGAGCTCCTCCTCCTCCTGCTCGAGCCCGTCTACGAGGCGAGGTT
CTCACCCAAGTCCTTCGCCTTTCGCCCCGGCCGATCTCCGCACGCCGCCATCCGCACCAT
CCGCCGCAGCTTCGCGCCCTACCTCTGGTACATCAAGGGTGACCTCTCCCCGCTCCTCCA
CTCCCCGGACCCTGCCCTGGTCGTCGGCGCGCTTATCCGCGATGTGCGCGACAAGAAGGT
CGTTGATTTGGTTCGTTCGGCATTGCTCACCCCACCTGTGACCGCGAGGCCCGGCGATGA
AGATGCGGCGAAGAAGAAGAAGAAGAGGAAGTACCAGAAGAAGAAGGTGCTTCCAGAGGG
AGAGCCGAAGCCTGACCCCTACTGGTTACAGACATTCTTTGGGTTTGCGCCGGAGGAGGC
ACTCACCCAGCCTGATTGGGGGCATTGTGGAGTGCTGAGCCCATTGCTTGCCAATGTGTG
CTTAGATGAGCTTGATAAATGGATGGAGGAGAAGATTAAGGAATTGTACAGGCCGTCCAA
GTCGGATGTTGTGGGAGGGGAGGATGGAGTTGAGCAGGGGAACACTTCATGGCCAGAGTT
TGTCCCCACGAGCGGCCCTGACAAAACGAGGAAGGTGGACTACATTCGATTCGGTGGCCA
TTTCTTAATCGGGGTGAGGGGTCCGAGGGCAGATGCAGCAGTGCTCCGAAAACAGCTTGT
TGAATTCTGCGACCAGCGGTTCAGGATCAAGCTTGACAACGAGAGCCTCCCGATCGAGCA
TATCACTAAAGGGATCATGTTCCTTGATCATGTGCTGTGTCGTCGTGTTGTGTACCCGAC
TCTCCGTTACACAGCCACTGGAGGCAAGATCATCAGCGAGAAGGGGGTTGGGACTCTGCT
CTCTGTGACAGCCAGTTTGAAGCAGTGCATCAAGCAGTTCCGGAAGCTTGAGTTTTTAAA
GGGGGACCGTGAACCAGACCCACAACCGTGCTTCAGGATGTTCCATGCCACACAAGCTCA
CACAAACGCGCAGATGAATAAGCTCTTGCTGACAATGGCAGAATGGTATCGTTATGCTGA
TAACCGCAAGAAGGTTGTCAACTTCTGCTCATACATTATAAGGGGGTCCTTGGCAAAGTT
ATATGCTGCCAAATACAAATTGAGGTCGAGGGCAAAGGTCTACAAGATTGCTTCAAGGAA
TCTTAGTCGACCATTGAAGGATAAGAAAGGGCAGTCGCCGGAGTACCACAATCTGCTGAG
AATGGGTCTTGTGGACTCAATTGATGGACTTCAGTATACACGGATGTCGATGGTTCCTGA
TCCTGATTACACACCATTACCAAGTGGATGGCGCCCTGACCATGAAAAGATTTTGCTGGA
GTATATAAAGCTCACAGATCAACAAACCCTGGATGAGCAGCGAAGCTGCATTAGGGAGGA
AGGACTTATAACTCCACAGGACTACATTTCAATGCTTGTATGGAGCTACAAGAAAAATGC
AGTTTTACTACCTTCGTTCAAAGAGAATGATCACAAAGGATCCACAGAGGACTTGGGTTC
AGATACAGATGAATTGGGTGATGAGGAAATAGGAAATCTGGACCATGTCGATTCCCCAAA
GGTTGCTGAAATGCCATGAGTGTTGAATTGATGAAAATGACTACTACTCTCATACTCTGA
AGGGGCAGTTAACAAGATAGCTGACTGATGCTGCTGGAGTTGCAAGAAATCAACTAACTC
GTGGTGAACATAAACTATGGTATAGAGCTGTAATGTGCCTGTCAAATCTCTTGCAATCAG
CTGGGCTGGTTCCTAAGTGCCTAACTAGATGTCTGATTCCTACTCAGGGACATCAAATTT
TGTGCAGCTTCAACTTCAACAATATTTCTCAATACTCAGGATTATATTGGATGCTTGCTG
CGGTGAGAAAGAAGCCAGAATGGACATTCAGAGGATCAAACTTTGCTGCCAGACTGTGCA
TCTGCATGCAGAACCAGCTGCTTACCGCCAAGCTTATATTTTAGTAAGACTAGCGGCCTT
ACCAATCCTATTTATACATCTCCAGCGCATTTGGAAAAATCACAGTGTACACATTCTGCC
CAAACGTCCTGTTCGTGCAATTTTCTACTCATCTGTAGAATGTTTTACAGAAAGCAGAGG
TCACAGAATTTACTTATA