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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0567400-02
CDS Infomation

cds chromosome:IRGSP-1.0:10:22482882:22486292:-1 gene:Os10g0567400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:chlorophyll a oxygenase, Chlorophyll a oxygenase 1, Lls1-homologue of maize, 3, 8-divinyl chlorophyllide a 8-vinyl reductase description:Similar to Rieske. (Os10t0567400-01);Similar to Isoform 2 of Chlorophyllide a oxygenase, chloroplastic. (Os10t0567400-02);Similar to Isoform 2 of Chlorophyllide a oxygenase, chloroplastic. (Os10t0567400-03)
Sequence

ATGGTGACCTTGCTGATTGAAACTACACAGGGTGTTGGTAGATATGGAGGAATCAAGGTG
TATGCGGTGCTCGGTGATGATGGAGCTGACTATGCAAAGAACAACGCATGGGAGGCCTTG
TTCCATGTCGATGACCCGGGGCCAAGGGTTCCAATTGCAAAAGGCAAGTTCTTGGATGTC
AACCAAGCTCTTGAGGTGGTCCGGTTCGATATCCAGTATTGCGATTGGAGGGCGCGGCAG
GACCTCCTCACCATCATGGTTCTTCACAACAAGGTGGTAGAGGTTCTTAATCCTTTAGCA
AGGGAGTTCAAGTCAATTGGAACCTTGAGGAAAGAGCTTGCAGAATTACAGGAAGAATTG
GCAAAAGCTCACAATCAGGTTCATCTGTCGGAAACTAGAGTATCATCTGCCCTTGATAAG
TTGGCACAAATGGAGACCCTTGTCAACGACAGACTGTTGCAAGATGGAGGCTCTAGCGCA
TCTACAGCCGAGTGCACTTCCCTTGCTCCAAGCACGTCATCAGCGTCCCGTGTTGTAAAC
AAGAAACCTCCTCGCCGGAGTCTGAACGTGTCTGGTCCAGTGCAGCCATACAATCCCAGT
CTGAAGAACTTCTGGTACCCAGTTGCTTTCTCCAGTGACCTAAAAGACGATACAATGGTG
CCAATAGATTGTTTTGAGGAGCAGTGGGTAATTTTCCGAGGAAAGGATGGGAGACCTGGA
TGTGTTATGAACACATGTGCTCACAGAGCTTGCCCTCTTCATCTTGGCTCAGTTAATGAG
GGCAGAATCCAATGCCCTTACCATGGTTGGGAGTATTCAACTGATGGAAAATGTGAGAAA
ATGCCATCCACAAAGATGCTCAACGTGCGCATCCGGTCATTACCATGCTTTGAGCAAGAA
GGAATGGTTTGGATATGGCCTGGCAATGACCCACCGAAGTCGACTATCCCTTCTCTGCTG
CCTCCTTCAGGATTTACAATTCACGCAGAGATAGTGATGGAGCTACCAGTGGAGCATGGA
CTTCTTCTGGACAATCTATTAGATCTTGCTCATGCTCCTTTTACTCATACATCCACCTTT
GCCAAGGGTTGGAGTGTTCCAAGCTTGGTGAAGTTCTTGACACCTTCATCTGGGCTTCAA
GGATACTGGGATCCATACCCGATCGACATGGAATTTCGACCACCATGCATGGTGTTGTCA
ACCATTGGCATCTCAAAGCCTGGAAAACTAGAGGGGAAGAGCACCAAGCAATGTTCGACG
CATCTCCACCAGCTCCATATCTGTTTGCCCTCCTCTAGGAATAAAACCAGGCTGCTCTAC
CGGATGTCTCTCGACTTCGCTCCATGGATCAAGCATGTCCCTTTCATGCATATACTATGG
TCACATTTTGCTGAGAAGGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAA
CGGATGATCAATGGCGCAAATGTCTGGAACTGGCCAGTATCATATGACAAGCTTGGTATC
CGGTATCGGTTGTGGAGAGACGCCATTGAGAGGGGAGTAGACAGGTTGCCATTCAGTAAC
CAAAGTGAGAGTGGATCATAG

Peptide Sequence

PEP ID

Os10t0567400-02
PEP Infomation

pep chromosome:IRGSP-1.0:10:22482882:22486292:-1 gene:Os10g0567400 transcript:Os10t0567400-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:chlorophyll a oxygenase, Chlorophyll a oxygenase 1, Lls1-homologue of maize, 3, 8-divinyl chlorophyllide a 8-vinyl reductase description:Similar to Rieske. (Os10t0567400-01);Similar to Isoform 2 of Chlorophyllide a oxygenase, chloroplastic. (Os10t0567400-02);Similar to Isoform 2 of Chlorophyllide a oxygenase, chloroplastic. (Os10t0567400-03)
Sequence

MVTLLIETTQGVGRYGGIKVYAVLGDDGADYAKNNAWEALFHVDDPGPRVPIAKGKFLDV
NQALEVVRFDIQYCDWRARQDLLTIMVLHNKVVEVLNPLAREFKSIGTLRKELAELQEEL
AKAHNQVHLSETRVSSALDKLAQMETLVNDRLLQDGGSSASTAECTSLAPSTSSASRVVN
KKPPRRSLNVSGPVQPYNPSLKNFWYPVAFSSDLKDDTMVPIDCFEEQWVIFRGKDGRPG
CVMNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTKMLNVRIRSLPCFEQE
GMVWIWPGNDPPKSTIPSLLPPSGFTIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTF
AKGWSVPSLVKFLTPSSGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGKSTKQCST
HLHQLHICLPSSRNKTRLLYRMSLDFAPWIKHVPFMHILWSHFAEKVLNEDLRLVLGQQE
RMINGANVWNWPVSYDKLGIRYRLWRDAIERGVDRLPFSNQSESGS

Transcript Sequence

Transcript ID

Os10t0567400-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:22482882:22486292:-1 gene:Os10g0567400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:chlorophyll a oxygenase, Chlorophyll a oxygenase 1, Lls1-homologue of maize, 3, 8-divinyl chlorophyllide a 8-vinyl reductase description:Similar to Rieske. (Os10t0567400-01);Similar to Isoform 2 of Chlorophyllide a oxygenase, chloroplastic. (Os10t0567400-02);Similar to Isoform 2 of Chlorophyllide a oxygenase, chloroplastic. (Os10t0567400-03)
Sequence

GTTCTTCTTGTTGTTCCTTGAATCTGTTTTTGTTGTTGTTGTTTGGCGATTCTTGAATTT
GTTTTGGGGTATCTGGCGATGGGAGGAACCATGTTTCTTGTTTGGTTTTTGGGTTCAGGT
GGCCATTCTTGATGAAAAACTGAGTGTTTGAGTTTGAGCAGTGCAATGGAGTTACCATTT
TTGTTCTTCTGATTGGATTCTTTGTGATGGTTGATGTTTTTGTTCAGACAATGGTTTCAA
GGTTCTGTGATTCTTCAGACCCCATATCTTAAAACCTGTTGTATTGAAGTAAGCAAAAAA
ACAAATCTTGATCAAGGACAGCCTAGTTGCCAATTTTTCTTTGCAAATCTGAATGCAATT
CAATCTCTTTCTTCCAGCAAATGCGTGCAGCTTTCCCCCAGTAACCACAGGCTTATCTCT
GACACTGATTTAACTAGATTTTGCTAATCTCTTTGATACTAGTTTGTCTGCTAAAATAGA
GTGCATGTGAGGTTGATGAAAATTGATGGTGACCTTGCTGATTGAAACTACACAGGGTGT
TGGTAGATATGGAGGAATCAAGGTGTATGCGGTGCTCGGTGATGATGGAGCTGACTATGC
AAAGAACAACGCATGGGAGGCCTTGTTCCATGTCGATGACCCGGGGCCAAGGGTTCCAAT
TGCAAAAGGCAAGTTCTTGGATGTCAACCAAGCTCTTGAGGTGGTCCGGTTCGATATCCA
GTATTGCGATTGGAGGGCGCGGCAGGACCTCCTCACCATCATGGTTCTTCACAACAAGGT
GGTAGAGGTTCTTAATCCTTTAGCAAGGGAGTTCAAGTCAATTGGAACCTTGAGGAAAGA
GCTTGCAGAATTACAGGAAGAATTGGCAAAAGCTCACAATCAGGTTCATCTGTCGGAAAC
TAGAGTATCATCTGCCCTTGATAAGTTGGCACAAATGGAGACCCTTGTCAACGACAGACT
GTTGCAAGATGGAGGCTCTAGCGCATCTACAGCCGAGTGCACTTCCCTTGCTCCAAGCAC
GTCATCAGCGTCCCGTGTTGTAAACAAGAAACCTCCTCGCCGGAGTCTGAACGTGTCTGG
TCCAGTGCAGCCATACAATCCCAGTCTGAAGAACTTCTGGTACCCAGTTGCTTTCTCCAG
TGACCTAAAAGACGATACAATGGTGCCAATAGATTGTTTTGAGGAGCAGTGGGTAATTTT
CCGAGGAAAGGATGGGAGACCTGGATGTGTTATGAACACATGTGCTCACAGAGCTTGCCC
TCTTCATCTTGGCTCAGTTAATGAGGGCAGAATCCAATGCCCTTACCATGGTTGGGAGTA
TTCAACTGATGGAAAATGTGAGAAAATGCCATCCACAAAGATGCTCAACGTGCGCATCCG
GTCATTACCATGCTTTGAGCAAGAAGGAATGGTTTGGATATGGCCTGGCAATGACCCACC
GAAGTCGACTATCCCTTCTCTGCTGCCTCCTTCAGGATTTACAATTCACGCAGAGATAGT
GATGGAGCTACCAGTGGAGCATGGACTTCTTCTGGACAATCTATTAGATCTTGCTCATGC
TCCTTTTACTCATACATCCACCTTTGCCAAGGGTTGGAGTGTTCCAAGCTTGGTGAAGTT
CTTGACACCTTCATCTGGGCTTCAAGGATACTGGGATCCATACCCGATCGACATGGAATT
TCGACCACCATGCATGGTGTTGTCAACCATTGGCATCTCAAAGCCTGGAAAACTAGAGGG
GAAGAGCACCAAGCAATGTTCGACGCATCTCCACCAGCTCCATATCTGTTTGCCCTCCTC
TAGGAATAAAACCAGGCTGCTCTACCGGATGTCTCTCGACTTCGCTCCATGGATCAAGCA
TGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAGGTCTTGAATGAGGATCT
TCGACTCGTGCTCGGGCAGCAAGAACGGATGATCAATGGCGCAAATGTCTGGAACTGGCC
AGTATCATATGACAAGCTTGGTATCCGGTATCGGTTGTGGAGAGACGCCATTGAGAGGGG
AGTAGACAGGTTGCCATTCAGTAACCAAAGTGAGAGTGGATCATAGTAGCTGCATTGCCA
ATAGCCTCTTTTCAATTCTTGTCGTATTTCTTGGCGAGATGAAGATGAAGATGAAGATGA
TGATGGCCAGAACTAGTCAGTGGATGTATATGCACAGTTTGTTTAGGCGTGCGTCCCTGC
ATGGTTGGTTCACCATCTCCCTGAGCTTCGTTGCAGATTGAATTGGGTTCTGGAGAGGAA
AGGCTAATGGAAGGAGAGAATGATAGGCGACGTCATTCTGTGTAATTTTAAGTGTACACT
AGCGACAGCATCACGGGATGCAATTGTAATCTGAGGTTGATTTGTTTTTCTTCTTTTTTT
TTTCCTCCCCTTTTACCCATGTAAAAGTCGATCGCATGTCACGCTATGATGCATATATAT
GATCATACTATTGATTATTGAGCCATGAAGAACATGTAGCACGTTAATCAGAGAGACATG
GCTTGAGTCTAAACGTC