Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os10t0564400-01
CDS Infomation	cds chromosome:IRGSP-1.0:10:22289945:22293566:-1 gene:Os10g0564400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase 2) (DAHP synthetase 2) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2). (Os10t0564400-01)
Sequence	ATGACGTGTCACTCTGCCATGGCGGCTCTCACCGTTGGGCACGCGGCGATCGTCCATGCC ACCACGCGTCTCGAGGACGCCCGGTCCACCGGCCGTCGGCGGCGGCGGCGGGGGATGATC ACGGTGCGCGCGGCGGCGGCGGCGACGAGCGGGTGGGAGCCGGGCAGCTGGAGGGCGCGG CCGGCGAGGCAAATCCCGGAGTACCCGGACGCGGCGGCGCTGGAGGGCGCGGAGCGCGAG CTGGCGTCGTTCCCGCCGCTGGTGTTCGCCGGGGAGGCGCGGAAGCTGGAGGAGCGGCTC GGGGACGCCGCCATGGGGCGGGCCTTCCTCCTGCAGGGCGGCGACTGCGCCGAGAGCTTC AAAGAGTTCGCCGCCAACAACATCCGCGACACCTTTCGCCTCATGCTCCAGATGGCCGTC GTCCTCACCTTTGGCGGCCAGATGCCCACCATCAAGGTTGGAAGGATGGCTGGCCAATTT GCAAAGCCAAGATCAAACCCAACTGAGACTATAGATGGAGTGACACTTCCTTCCTATCGA GGTGATATTATTAACAGCGATGGTTTTGATGAGAAGTCGCGTGCACCAGATCCTGAAAGG TTAATTAGAGCCTACAGCCAGTCCGCGAGCACCCTGAATCTTCTGAGAGGATTTGCTCAT GGAGGGTATGCAGATCTGCAGAGAGTCACCCAGTGGAATCTTGACTTCTTGAGGGACAGC ACGCAAGGGGACAGGTATATGGAGCTGTCCGAGAGGGTTCACGATGCCATCGGATTTATG GTTGCTGCTGGTCTGACTCCTCAGCATCCCATCATGACGACGGCTGAATTCTGGACATCT CATGAGTGCCTTCATTTGCCATATGAGCAAGCATTGACTAGGGTGGACTCCATTTCTGGG CTTTACTACGATTGCTCTGCTCATATGCTTTGGGTTGGGGAGAGGACTCGACAACTGGAT GGTGCTCATGTTGAATTCCTTCGTGGTATTTCCAACCCTCTAGGTGTAAAGGTGAGTGAC AAGCTCGAACCTTCAGAGCTTGTTAAATTGTGTGAGATTTTGAATCCTCACAACAAGCCC GGAAGACTGACAATCATCACAAGAATGGGTGCTGAGAACACGCGCGTTAAGCTCCCACAT ATGATCAGAGCAGTCCGCCAAGCTGGGTTGATTGTCACTTGGGTCAGTGATCCCATGCAT GGGAACACCATCAGCGCACCATGTGGTCTCAAGACAAGATCATTCGACGCGATCAGGTGC GAGCTGAGGGCTTTCTTCGATGTCCATGAGCAAGAGGGAAGCTACCCTGGAGGGATTCAC CTGGAGATGACAGGGCAGAACGTTACAGAGTGCATTGGTGGATCCAAGACGGTGACCCTT GATGATCTCAGCTCTCGCTACCGCACGCACTGCGACCCCAGGCTGAATGCATCGCAGTCG CTTGAACTGGCTTTCGCCATTGCTGACAGGCTAAGGAAGAAACGAGACAGGGCTTGGAAT AGGTTGGTGTACAGGGCGGTAGCTTAA

Peptide Sequence

PEP ID	Os10t0564400-01
PEP Infomation	pep chromosome:IRGSP-1.0:10:22289945:22293566:-1 gene:Os10g0564400 transcript:Os10t0564400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase 2) (DAHP synthetase 2) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2). (Os10t0564400-01)
Sequence	MTCHSAMAALTVGHAAIVHATTRLEDARSTGRRRRRRGMITVRAAAAATSGWEPGSWRAR PARQIPEYPDAAALEGAERELASFPPLVFAGEARKLEERLGDAAMGRAFLLQGGDCAESF KEFAANNIRDTFRLMLQMAVVLTFGGQMPTIKVGRMAGQFAKPRSNPTETIDGVTLPSYR GDIINSDGFDEKSRAPDPERLIRAYSQSASTLNLLRGFAHGGYADLQRVTQWNLDFLRDS TQGDRYMELSERVHDAIGFMVAAGLTPQHPIMTTAEFWTSHECLHLPYEQALTRVDSISG LYYDCSAHMLWVGERTRQLDGAHVEFLRGISNPLGVKVSDKLEPSELVKLCEILNPHNKP GRLTIITRMGAENTRVKLPHMIRAVRQAGLIVTWVSDPMHGNTISAPCGLKTRSFDAIRC ELRAFFDVHEQEGSYPGGIHLEMTGQNVTECIGGSKTVTLDDLSSRYRTHCDPRLNASQS LELAFAIADRLRKKRDRAWNRLVYRAVA

Transcript Sequence

Transcript ID	Os10t0564400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:10:22289945:22293566:-1 gene:Os10g0564400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase 2) (DAHP synthetase 2) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2). (Os10t0564400-01)
Sequence	ATCCACTCGATGACGTGTCACTCTGCCATGGCGGCTCTCACCGTTGGGCACGCGGCGATC GTCCATGCCACCACGCGTCTCGAGGACGCCCGGTCCACCGGCCGTCGGCGGCGGCGGCGG GGGATGATCACGGTGCGCGCGGCGGCGGCGGCGACGAGCGGGTGGGAGCCGGGCAGCTGG AGGGCGCGGCCGGCGAGGCAAATCCCGGAGTACCCGGACGCGGCGGCGCTGGAGGGCGCG GAGCGCGAGCTGGCGTCGTTCCCGCCGCTGGTGTTCGCCGGGGAGGCGCGGAAGCTGGAG GAGCGGCTCGGGGACGCCGCCATGGGGCGGGCCTTCCTCCTGCAGGGCGGCGACTGCGCC GAGAGCTTCAAAGAGTTCGCCGCCAACAACATCCGCGACACCTTTCGCCTCATGCTCCAG ATGGCCGTCGTCCTCACCTTTGGCGGCCAGATGCCCACCATCAAGGTTGGAAGGATGGCT GGCCAATTTGCAAAGCCAAGATCAAACCCAACTGAGACTATAGATGGAGTGACACTTCCT TCCTATCGAGGTGATATTATTAACAGCGATGGTTTTGATGAGAAGTCGCGTGCACCAGAT CCTGAAAGGTTAATTAGAGCCTACAGCCAGTCCGCGAGCACCCTGAATCTTCTGAGAGGA TTTGCTCATGGAGGGTATGCAGATCTGCAGAGAGTCACCCAGTGGAATCTTGACTTCTTG AGGGACAGCACGCAAGGGGACAGGTATATGGAGCTGTCCGAGAGGGTTCACGATGCCATC GGATTTATGGTTGCTGCTGGTCTGACTCCTCAGCATCCCATCATGACGACGGCTGAATTC TGGACATCTCATGAGTGCCTTCATTTGCCATATGAGCAAGCATTGACTAGGGTGGACTCC ATTTCTGGGCTTTACTACGATTGCTCTGCTCATATGCTTTGGGTTGGGGAGAGGACTCGA CAACTGGATGGTGCTCATGTTGAATTCCTTCGTGGTATTTCCAACCCTCTAGGTGTAAAG GTGAGTGACAAGCTCGAACCTTCAGAGCTTGTTAAATTGTGTGAGATTTTGAATCCTCAC AACAAGCCCGGAAGACTGACAATCATCACAAGAATGGGTGCTGAGAACACGCGCGTTAAG CTCCCACATATGATCAGAGCAGTCCGCCAAGCTGGGTTGATTGTCACTTGGGTCAGTGAT CCCATGCATGGGAACACCATCAGCGCACCATGTGGTCTCAAGACAAGATCATTCGACGCG ATCAGGTGCGAGCTGAGGGCTTTCTTCGATGTCCATGAGCAAGAGGGAAGCTACCCTGGA GGGATTCACCTGGAGATGACAGGGCAGAACGTTACAGAGTGCATTGGTGGATCCAAGACG GTGACCCTTGATGATCTCAGCTCTCGCTACCGCACGCACTGCGACCCCAGGCTGAATGCA TCGCAGTCGCTTGAACTGGCTTTCGCCATTGCTGACAGGCTAAGGAAGAAACGAGACAGG GCTTGGAATAGGTTGGTGTACAGGGCGGTAGCTTAAGATATCTAGCTCGGAATTTTGGCC CTACAAGAAGAGATAGTATCTAGCTTGGAGTAGTTCATTCTTTTTTTTTCCCTTTGAAT