Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0564200-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:22284367:22285783:1 gene:Os10g0564200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homeodomain-like containing protein. (Os10t0564200-01)
Sequence

ATGTCGTCCTCCTCCTCCCCGCCGCCCAACCCGGACGCGCTCTCCTCCCCGGACCTCCCC
CCGCTGGCCGCCCCCGCGGCGGCGGCCGCGGCAGCCGCCGCCGCGGTGTCATCTGGTGGC
GCGGGGGGCTCCGGGCGGAGGCTGCCCCCGCCGTGCTGGACGCACGAGGAGACGCTGGCG
CTCATCGAGGCCTACCGCGATAGGTGGGAGGGGCTCCGCAAGGGGAACCTCAGAGCCTCC
GACTGGGACGACGTCGCCGGCGCCGTCACCGCCCGCTGCGGGAGGTTCCCCACGGCGACG
CACAAGTCCGGCGTCCAGTGCCGCCACAAGATCGAGAAGCTCCGGAAGCGGTACCGCGCC
GAGAGGGCGCGCGCCGCCGGCCGCTCCAAGGGCCCCAAGTGGCCCTTCTTCCCGCTCCTC
CACGACCTCGCCGGCGGCGGGGCGCCCGACCCTAGCCCCAACCCCATCATCAAGATCAAA
TCCAAGGGCCCCGCCGCCGCGGCCGCCTCCCCCTCACCGGCGTCCCCTTCTCCCGTCTCC
TCCCCTTCCTCCGAGGAGGATGAGGAGGAGGAGGCGGCGGCGGACGCGGGGCGGAGCAGG
AGCCTTCACGGCCTCATCTCCAACGGCGGGAGCGGGAGCGGCCTGCGCTTCACCATCCCC
AAGGCCTCCCGCTCCAAGCCTGTGGCGCAGCGAGAACAACCCACCGCCATCAAGGTGGAG
AAGAGCGAGGAGGACGCCGAGGCGGAGGCCATGGCCGAGGTGGCCTCGGCGCTGCGCGCC
GTCGGCGACAAGTTCCTCCGCATGGAGGAGCGGAGGCTGGAGATCTCTCTCCAGATAGAG
AAGGAGCGGATGGAGTCTGAGATGAAGCGCACCCAGACGCTGCTCGACGCCCAGCAGCTG
TTCGTCGAGGCCTTCCTCGGCAAGCAGCAGCACCACCACCACCACCACAAGAAGGCCAAG
GTGATCTCCGCCGCCGCTGCCGCAGCAACAGCCGCCATGGATGAGGATTGA

Peptide Sequence

PEP ID

Os10t0564200-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:22284367:22285783:1 gene:Os10g0564200 transcript:Os10t0564200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homeodomain-like containing protein. (Os10t0564200-01)
Sequence

MSSSSSPPPNPDALSSPDLPPLAAPAAAAAAAAAAVSSGGAGGSGRRLPPPCWTHEETLA
LIEAYRDRWEGLRKGNLRASDWDDVAGAVTARCGRFPTATHKSGVQCRHKIEKLRKRYRA
ERARAAGRSKGPKWPFFPLLHDLAGGGAPDPSPNPIIKIKSKGPAAAAASPSPASPSPVS
SPSSEEDEEEEAAADAGRSRSLHGLISNGGSGSGLRFTIPKASRSKPVAQREQPTAIKVE
KSEEDAEAEAMAEVASALRAVGDKFLRMEERRLEISLQIEKERMESEMKRTQTLLDAQQL
FVEAFLGKQQHHHHHHKKAKVISAAAAAATAAMDED

Transcript Sequence

Transcript ID

Os10t0564200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:22284367:22285783:1 gene:Os10g0564200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homeodomain-like containing protein. (Os10t0564200-01)
Sequence

ATTTCACCTCCCCGGCCCACGCCCGCCGCGCGGCCCACCTCCGCCTTTATGACCGATTCC
CCATCCCCTCCTCTCTCCTCCACCACCAAACCCTAGCTCCCACCGCCGCCGACGATGTCG
TCCTCCTCCTCCCCGCCGCCCAACCCGGACGCGCTCTCCTCCCCGGACCTCCCCCCGCTG
GCCGCCCCCGCGGCGGCGGCCGCGGCAGCCGCCGCCGCGGTGTCATCTGGTGGCGCGGGG
GGCTCCGGGCGGAGGCTGCCCCCGCCGTGCTGGACGCACGAGGAGACGCTGGCGCTCATC
GAGGCCTACCGCGATAGGTGGGAGGGGCTCCGCAAGGGGAACCTCAGAGCCTCCGACTGG
GACGACGTCGCCGGCGCCGTCACCGCCCGCTGCGGGAGGTTCCCCACGGCGACGCACAAG
TCCGGCGTCCAGTGCCGCCACAAGATCGAGAAGCTCCGGAAGCGGTACCGCGCCGAGAGG
GCGCGCGCCGCCGGCCGCTCCAAGGGCCCCAAGTGGCCCTTCTTCCCGCTCCTCCACGAC
CTCGCCGGCGGCGGGGCGCCCGACCCTAGCCCCAACCCCATCATCAAGATCAAATCCAAG
GGCCCCGCCGCCGCGGCCGCCTCCCCCTCACCGGCGTCCCCTTCTCCCGTCTCCTCCCCT
TCCTCCGAGGAGGATGAGGAGGAGGAGGCGGCGGCGGACGCGGGGCGGAGCAGGAGCCTT
CACGGCCTCATCTCCAACGGCGGGAGCGGGAGCGGCCTGCGCTTCACCATCCCCAAGGCC
TCCCGCTCCAAGCCTGTGGCGCAGCGAGAACAACCCACCGCCATCAAGGTGGAGAAGAGC
GAGGAGGACGCCGAGGCGGAGGCCATGGCCGAGGTGGCCTCGGCGCTGCGCGCCGTCGGC
GACAAGTTCCTCCGCATGGAGGAGCGGAGGCTGGAGATCTCTCTCCAGATAGAGAAGGAG
CGGATGGAGTCTGAGATGAAGCGCACCCAGACGCTGCTCGACGCCCAGCAGCTGTTCGTC
GAGGCCTTCCTCGGCAAGCAGCAGCACCACCACCACCACCACAAGAAGGCCAAGGTGATC
TCCGCCGCCGCTGCCGCAGCAACAGCCGCCATGGATGAGGATTGATCTACTCCATGTTGT
TGGTATGGCCTACTATGTGTTTAGTAATGTTTACTTCTCATTGTTAACTGCTGGTGTTGA
CTTGTGATAATTCTACTAGCTGTTGTTTGTGTTTGGGAGGGTGATTAAAGTAGTCAGGTG
TAGGATATGGAGTGGGGGAGTGAGGAGGAGGATTAGGAGTGAGTGCTCAGTTAAGCTGCC
TGTAATCAGTTCAGTGATCTTGTGCTTGAGTTGCTGCTGCTGAAGCTGCCTTGTCCAAAT
ACTTCTGTAGTAGCATATTATTGTCAGGTTTTTACTC