Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0561200-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:22121800:22123835:-1 gene:Os10g0561200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to CigA protein. (Os10t0561200-01)
Sequence

GCTTTGCTTACCGATCCGATCCGATTCGCCGGCGTCGGCGGCGGCGGCGGCGAGATGGAT
TTGCCGGCGAGCCGCGGGCGGTGGCGGAAGCGGAGCGCCCGGTCGCACGCGCCCCTCCTC
GTGGCCGTCCTCGTGCTCCTCATCCCGGCCTCCCTCCTCCTCTCCTCGGCCTACTCCTCG
CTGCTCCGCTCCATCCTCCCCTTCTCCGGCTTCGGAGGCGGTGGCGGAGGAGGGGGCAGA
AGATGTGGGCGGTCGCCGGAGCTGGAAGGGGAGAGGTTTCTTTGGTACGCGCCGCACAGC
GGGTTCAGCAACCAGGTGGGCGAGCTCCGGAATGCCGCCGTCGCCGCCGCGCTGCTCAAC
CGCACCCTCGTCGTGCCCCCGGTGCTCGACCACCACGCCGTCGTCCTCGGGAGCTGCCCC
AAGTTCAGGGTCGCCGACGCTTCCGACCTCCGCGCCGCCGTCTGGGACCACTCCATGCAG
CTCCTCCGGGAGCGGAGGTATGTATCCATGGGTGACATAATTGATCTATCGCCGATAAAG
GCTACGGTTAGAACGATTGATTTCAGGGTGTTTGTCTCATTGTGGTGCGGCGTAGACATG
CGCAAGACTTGCTTCTCTGGCTTGTGCTGTGCTGTCTCTGGTGGTGGATCGCTGCCAGGT
GATTACGATAGATGCCGATCGATGCTGTCCGGTTTAGGGGGCAGCGAAAATGGCTGTGTG
TATCCTGTCCAGGACGATTGCCGAACAACAGTCTGGACATATCAAGAGAATAATGATGGG
GCGCTTGATTCATTTCAACCAGATGAAGACTTGAAAAAGAGGAAAAAGATATCATACGTT
AGGAGGCGCAAAGATATGTACAAGGCTTTGGGGCCTGGTTCTGAAGCTGAGGATGCTTCC
TTGTTGGCATTTGGGACACTTTTCTCAGGACCATACAAGGGATCAGAGTCATATTTTGAT
ATCCACGAATCGCCAAAGGATCGTCGGCTACAGACTATACTTGAGAAGGTTGAGTTCCTC
CCTTTTGCCCCTGAGATCATTGCTACAGGGAAGGAGTTCGCTAGGAAAAAGATCAAGGAG
CCATTTCTTTGCGCACAGCTAAGGCTGTTAGATGGGCAATTCAAAAATCACTGGAAAGCT
ACATTTTCTGCACTCAAGGAGAAGTTAAAGGCTGTTGCGTTGGAAATGAAGAAAACCCAG
GGTAGTGGTCCTATTCACATGTTCATGATGACTGATCTTCCACCAGCAAACTGGTCAAAG
ACCTATCTTGCAGATATTGCAAAAGATGGGAGATATAAATTGCACACCCTGAAGGAAAGT
GATGAACTGGTGGCACAGACCGCAGAGCGGCTTATGGCTGCTGAACATGGTGTGAGATCT
GGATTTATTCCCAAAAACATAGCAAACACGAGGAAGGATTGTGATCCAGTTCAACTACCA
GAAATTTTGTTATATGTTGAAGAATCTGTCTGTAGCTGTGCATCACTAGGATTTGTGGGG
ACTGCTGGATCAACCATAGCAGGAAGCATAGAAACAATGAGGAAGAACAATGTCTGCCAA
TTGTAG

Peptide Sequence

PEP ID

Os10t0561200-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:22121800:22123835:-1 gene:Os10g0561200 transcript:Os10t0561200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to CigA protein. (Os10t0561200-01)
Sequence

ALLTDPIRFAGVGGGGGEMDLPASRGRWRKRSARSHAPLLVAVLVLLIPASLLLSSAYSS
LLRSILPFSGFGGGGGGGGRRCGRSPELEGERFLWYAPHSGFSNQVGELRNAAVAAALLN
RTLVVPPVLDHHAVVLGSCPKFRVADASDLRAAVWDHSMQLLRERRYVSMGDIIDLSPIK
ATVRTIDFRVFVSLWCGVDMRKTCFSGLCCAVSGGGSLPGDYDRCRSMLSGLGGSENGCV
YPVQDDCRTTVWTYQENNDGALDSFQPDEDLKKRKKISYVRRRKDMYKALGPGSEAEDAS
LLAFGTLFSGPYKGSESYFDIHESPKDRRLQTILEKVEFLPFAPEIIATGKEFARKKIKE
PFLCAQLRLLDGQFKNHWKATFSALKEKLKAVALEMKKTQGSGPIHMFMMTDLPPANWSK
TYLADIAKDGRYKLHTLKESDELVAQTAERLMAAEHGVRSGFIPKNIANTRKDCDPVQLP
EILLYVEESVCSCASLGFVGTAGSTIAGSIETMRKNNVCQL

Transcript Sequence

Transcript ID

Os10t0561200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:22121800:22123835:-1 gene:Os10g0561200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to CigA protein. (Os10t0561200-01)
Sequence

GGCTTTGCTTACCGATCCGATCCGATTCGCCGGCGTCGGCGGCGGCGGCGGCGAGATGGA
TTTGCCGGCGAGCCGCGGGCGGTGGCGGAAGCGGAGCGCCCGGTCGCACGCGCCCCTCCT
CGTGGCCGTCCTCGTGCTCCTCATCCCGGCCTCCCTCCTCCTCTCCTCGGCCTACTCCTC
GCTGCTCCGCTCCATCCTCCCCTTCTCCGGCTTCGGAGGCGGTGGCGGAGGAGGGGGCAG
AAGATGTGGGCGGTCGCCGGAGCTGGAAGGGGAGAGGTTTCTTTGGTACGCGCCGCACAG
CGGGTTCAGCAACCAGGTGGGCGAGCTCCGGAATGCCGCCGTCGCCGCCGCGCTGCTCAA
CCGCACCCTCGTCGTGCCCCCGGTGCTCGACCACCACGCCGTCGTCCTCGGGAGCTGCCC
CAAGTTCAGGGTCGCCGACGCTTCCGACCTCCGCGCCGCCGTCTGGGACCACTCCATGCA
GCTCCTCCGGGAGCGGAGGTATGTATCCATGGGTGACATAATTGATCTATCGCCGATAAA
GGCTACGGTTAGAACGATTGATTTCAGGGTGTTTGTCTCATTGTGGTGCGGCGTAGACAT
GCGCAAGACTTGCTTCTCTGGCTTGTGCTGTGCTGTCTCTGGTGGTGGATCGCTGCCAGG
TGATTACGATAGATGCCGATCGATGCTGTCCGGTTTAGGGGGCAGCGAAAATGGCTGTGT
GTATCCTGTCCAGGACGATTGCCGAACAACAGTCTGGACATATCAAGAGAATAATGATGG
GGCGCTTGATTCATTTCAACCAGATGAAGACTTGAAAAAGAGGAAAAAGATATCATACGT
TAGGAGGCGCAAAGATATGTACAAGGCTTTGGGGCCTGGTTCTGAAGCTGAGGATGCTTC
CTTGTTGGCATTTGGGACACTTTTCTCAGGACCATACAAGGGATCAGAGTCATATTTTGA
TATCCACGAATCGCCAAAGGATCGTCGGCTACAGACTATACTTGAGAAGGTTGAGTTCCT
CCCTTTTGCCCCTGAGATCATTGCTACAGGGAAGGAGTTCGCTAGGAAAAAGATCAAGGA
GCCATTTCTTTGCGCACAGCTAAGGCTGTTAGATGGGCAATTCAAAAATCACTGGAAAGC
TACATTTTCTGCACTCAAGGAGAAGTTAAAGGCTGTTGCGTTGGAAATGAAGAAAACCCA
GGGTAGTGGTCCTATTCACATGTTCATGATGACTGATCTTCCACCAGCAAACTGGTCAAA
GACCTATCTTGCAGATATTGCAAAAGATGGGAGATATAAATTGCACACCCTGAAGGAAAG
TGATGAACTGGTGGCACAGACCGCAGAGCGGCTTATGGCTGCTGAACATGGTGTGAGATC
TGGATTTATTCCCAAAAACATAGCAAACACGAGGAAGGATTGTGATCCAGTTCAACTACC
AGAAATTTTGTTATATGTTGAAGAATCTGTCTGTAGCTGTGCATCACTAGGATTTGTGGG
GACTGCTGGATCAACCATAGCAGGAAGCATAGAAACAATGAGGAAGAACAATGTCTGCCA
ATTGTAGGAGAACTGCACACATCCTTCGAGCAAACTGCCTGAAAAAACTAACCACCGTTA
CTTGACTCGTCGACTGTAGATAGCAATATGAGAGCCGTTACACAACAGAAGCTGAATCCT
TGAGATCTTCCATCCCCAGTGCATGCATGACTGCATGAGTATATAATGCTGAAAGCCCAC
GTTTTTTTTGTTTTTTTTATTTGAGTAGAAAGGTATAACGTGTGCCTTAATCATTCAGTT
TTGTAAGTTTGGATACATTTATTTATTTTTTGGTATGTAATGTATCCTTCATCCTC