Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os10t0558100-00
CDS Infomation	cds chromosome:IRGSP-1.0:10:21962401:21963276:-1 gene:Os10g0558100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Matrixin family protein, expressed. (Os10t0558100-00)
Sequence	TCAATCGTAACTAGTTACGTGACAACGATCAATACGCTAGTATTGCAACTCACCGGCGGC ACGTATACGTACACGATGTTTCTGCTGTGTGGCTGTGGCACCGGCTCCCAGCCGACGCGA CTGCGGTCCCAAGACAACAACGGCGGCGGCGGCGCGGCGGCGTTCACGTTCCTGTGGGGC AGACCACGGTGGAATCGGCCGGACATGCGGCTGACGTACGCCGTGTCGCCGTTGGCCACC GCCGACCACCTCCCGCGGGACGCCGTGCGGGAGGCGTTCCGGAGCGCGCTCGCGCGGTGG GCGGAGGTGACGCCCCTGAGGTTCGCGGAGGCGGCGCGCTACGAGGAGGCGGACATCAGG GTGGGGTTCTACCTCCACACAGCCGACGGCAAGTGCGACGCGTGCGGCTGCGTCTGCAAG GGCGGCGGCGAGGAGGCGCTCGCCCACGCGCACCCGCCGCAGGACGGGCGGATACACCTG CACGCGGCGCGGAAGTGGGCGGTGACGAACGTGGCCGGCGCCGGCGGGGACGCGCCGCCG CTCGCCGTCGACCTGGAGTCGGTGGCGGTGCACGAGATCGGCCACGCGCTCGGGCTCGGC CACTCGTCGTCGGAGAGCTCGATGATGTACAGGCATTACAGGGGGAAGGTGAGCCTCACC GACGACGACGTCAAGGGCGTCCAGGAGCTGTACGGTGCCAAACCACCACGTGTCGACTTG ACAGCCGACTCCAAGCCCAAGCGCGTCGAAACTATAAGGGAAATTGAACAGCACATCCAG CAGAAAAAGGAAACAGCAAAGAAAAAACCCTTTTTTTGGCGACTCGTACGTCTACCACTC TACCCTCCATGTCTTGCCTGTGCCGTTAATAGTTAG

Peptide Sequence

PEP ID	Os10t0558100-00
PEP Infomation	pep chromosome:IRGSP-1.0:10:21962401:21963276:-1 gene:Os10g0558100 transcript:Os10t0558100-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Matrixin family protein, expressed. (Os10t0558100-00)
Sequence	SIVTSYVTTINTLVLQLTGGTYTYTMFLLCGCGTGSQPTRLRSQDNNGGGGAAAFTFLWG RPRWNRPDMRLTYAVSPLATADHLPRDAVREAFRSALARWAEVTPLRFAEAARYEEADIR VGFYLHTADGKCDACGCVCKGGGEEALAHAHPPQDGRIHLHAARKWAVTNVAGAGGDAPP LAVDLESVAVHEIGHALGLGHSSSESSMMYRHYRGKVSLTDDDVKGVQELYGAKPPRVDL TADSKPKRVETIREIEQHIQQKKETAKKKPFFWRLVRLPLYPPCLACAVNS

Transcript Sequence

Transcript ID	Os10t0558100-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:10:21962401:21963276:-1 gene:Os10g0558100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Matrixin family protein, expressed. (Os10t0558100-00)
Sequence	TCAATCGTAACTAGTTACGTGACAACGATCAATACGCTAGTATTGCAACTCACCGGCGGC ACGTATACGTACACGATGTTTCTGCTGTGTGGCTGTGGCACCGGCTCCCAGCCGACGCGA CTGCGGTCCCAAGACAACAACGGCGGCGGCGGCGCGGCGGCGTTCACGTTCCTGTGGGGC AGACCACGGTGGAATCGGCCGGACATGCGGCTGACGTACGCCGTGTCGCCGTTGGCCACC GCCGACCACCTCCCGCGGGACGCCGTGCGGGAGGCGTTCCGGAGCGCGCTCGCGCGGTGG GCGGAGGTGACGCCCCTGAGGTTCGCGGAGGCGGCGCGCTACGAGGAGGCGGACATCAGG GTGGGGTTCTACCTCCACACAGCCGACGGCAAGTGCGACGCGTGCGGCTGCGTCTGCAAG GGCGGCGGCGAGGAGGCGCTCGCCCACGCGCACCCGCCGCAGGACGGGCGGATACACCTG CACGCGGCGCGGAAGTGGGCGGTGACGAACGTGGCCGGCGCCGGCGGGGACGCGCCGCCG CTCGCCGTCGACCTGGAGTCGGTGGCGGTGCACGAGATCGGCCACGCGCTCGGGCTCGGC CACTCGTCGTCGGAGAGCTCGATGATGTACAGGCATTACAGGGGGAAGGTGAGCCTCACC GACGACGACGTCAAGGGCGTCCAGGAGCTGTACGGTGCCAAACCACCACGTGTCGACTTG ACAGCCGACTCCAAGCCCAAGCGCGTCGAAACTATAAGGGAAATTGAACAGCACATCCAG CAGAAAAAGGAAACAGCAAAGAAAAAACCCTTTTTTTGGCGACTCGTACGTCTACCACTC TACCCTCCATGTCTTGCCTGTGCCGTTAATAGTTAG