Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0553300-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:21707054:21710973:-1 gene:Os10g0553300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TREHALOSE-6-PHOSPHATE PHOSHPHATASE 2 description:Similar to Trehalose-6-phosphate phosphatase. (Os10t0553300-01)
Sequence

ATGGATTTGAAGACAAGCAACTCTCCTGTTATTGCTGATCCTCTCCCTAAATTAGCCTTG
CCATCTGCTGTGATGACGTACACTACACCTACGAGTTTCCCCTCTACCGGGCTGTACTTG
AACACTCCGAAAAAGAAGCCTCTGCCTGGAAAGATCGAAGAAGTCCGCGCCGCTGGATGG
CTTGATCTCATGCTGGCCTCCTCGCCACCTCGCAAGAGGCAGACTAAGGACTTTGCCAAT
GATGTTCAAGCTGACGAGCTTGATTTGCTATACCGTAATTGGGTGGTGAACCATCCATCT
GCTTTAACATCATTTGAGGATATTGTTAATCTTGCCAGAGGTAAAAGATTGGCACTGTTC
CTTGATTATGATGGAACTCTTTCACCGATTGTGGACAATCCTGAAAATGCAGTAATGTCT
GACGAGATGCGCTCTGCTGTGAAGCATGTGGCATCACTTTTTCCCACTGCGATCATTAGT
GGAAGATCTCGTGATAAGGTTTTTGACTTTGTGAAACTAACTGAACTGTATTACGCTGGA
AGTCATGGAATGGATATCATGGGGCCTGTTAGGAAGTCTGATTCGAGTGGTCAGCATGTG
GAATGTATCAGGTCCACTGATTCAGAGGGTAAAGAGGTCAACCTCTTCCAACCTGCAAGT
GAGTTTTTACCTATGATTAGCGAGGTGTACAAAAAGCTCAGTGAAAGTATTAAGGACATT
GATGGTGCAAGGATGGAAGATAACAAATTCTGTGTGTCCGTTCATTACCGCAATGTAGCA
CCACATGACTACGGAGAAGTTCATCAACGTGTGACTGCCGTCCTGAAGAATTACCCTTGT
CTAAGGCTTACCCATGGGAGAAAGGTTCTTGAGGTTCGACCTGTGATAGACTGGAACAAG
GGGAAAGCTGTGGAATTTTTGCTGGAGTCACTTGGACTATGTGGGAAAGAAGATGTTCTT
CCTATCTATGTTGGAGATGACAAGACTGATGAGGATGCATTCAAGGTTCTGAAGGCAAAC
AGCATTGGCTTTGGAATTTTGGTGTCATCTGTGCCCAAGGATACTGATGCTTTCTATTCC
GTACGGGACCCAGCTGAGGTGATGGAATTCCTGAAGAAACTGGCATCTTGGAAGGAGGAA
TCCACTTAA

Peptide Sequence

PEP ID

Os10t0553300-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:21707054:21710973:-1 gene:Os10g0553300 transcript:Os10t0553300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TREHALOSE-6-PHOSPHATE PHOSHPHATASE 2 description:Similar to Trehalose-6-phosphate phosphatase. (Os10t0553300-01)
Sequence

MDLKTSNSPVIADPLPKLALPSAVMTYTTPTSFPSTGLYLNTPKKKPLPGKIEEVRAAGW
LDLMLASSPPRKRQTKDFANDVQADELDLLYRNWVVNHPSALTSFEDIVNLARGKRLALF
LDYDGTLSPIVDNPENAVMSDEMRSAVKHVASLFPTAIISGRSRDKVFDFVKLTELYYAG
SHGMDIMGPVRKSDSSGQHVECIRSTDSEGKEVNLFQPASEFLPMISEVYKKLSESIKDI
DGARMEDNKFCVSVHYRNVAPHDYGEVHQRVTAVLKNYPCLRLTHGRKVLEVRPVIDWNK
GKAVEFLLESLGLCGKEDVLPIYVGDDKTDEDAFKVLKANSIGFGILVSSVPKDTDAFYS
VRDPAEVMEFLKKLASWKEEST

Transcript Sequence

Transcript ID

Os10t0553300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:21707054:21710973:-1 gene:Os10g0553300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TREHALOSE-6-PHOSPHATE PHOSHPHATASE 2 description:Similar to Trehalose-6-phosphate phosphatase. (Os10t0553300-01)
Sequence

GCTCCGCCATCTTCTCTCCTCTCCCCTCTCACTCCTCCCAAATCCCCTCCATTGCCTTCC
TCGCTTCGCATCGCCGCTCCCGCCGCCGCCGTCGGGCTGCTCGCCGGCATTGGGTGTTGG
TTGTGACCGTATACAATTATTGTTTTTGGAGCTGAGCGATCAGATGCATGAGCCTTCCTT
TTAAATGATCTGTGTCCACCATGGCGATGAACCAAATGCAGGAACTTCCCGCTTAATGGG
CTGGATGCGTTGTATGCACGTTTGCAGTGACAAGAAGACATTGAAACGTTGGTTTTTTAT
TGACAAGAGGGTTGGTTGAGTGTCTAACTCTTAAGGAATCCTATAGTCTACTTGCTTGCT
CTTGTGTTGTTAGTAACTGTTCTTACAACAACTCTGCGGAGAGTTCTGTTGATGGATTTG
AAGACAAGCAACTCTCCTGTTATTGCTGATCCTCTCCCTAAATTAGCCTTGCCATCTGCT
GTGATGACGTACACTACACCTACGAGTTTCCCCTCTACCGGGCTGTACTTGAACACTCCG
AAAAAGAAGCCTCTGCCTGGAAAGATCGAAGAAGTCCGCGCCGCTGGATGGCTTGATCTC
ATGCTGGCCTCCTCGCCACCTCGCAAGAGGCAGACTAAGGACTTTGCCAATGATGTTCAA
GCTGACGAGCTTGATTTGCTATACCGTAATTGGGTGGTGAACCATCCATCTGCTTTAACA
TCATTTGAGGATATTGTTAATCTTGCCAGAGGTAAAAGATTGGCACTGTTCCTTGATTAT
GATGGAACTCTTTCACCGATTGTGGACAATCCTGAAAATGCAGTAATGTCTGACGAGATG
CGCTCTGCTGTGAAGCATGTGGCATCACTTTTTCCCACTGCGATCATTAGTGGAAGATCT
CGTGATAAGGTTTTTGACTTTGTGAAACTAACTGAACTGTATTACGCTGGAAGTCATGGA
ATGGATATCATGGGGCCTGTTAGGAAGTCTGATTCGAGTGGTCAGCATGTGGAATGTATC
AGGTCCACTGATTCAGAGGGTAAAGAGGTCAACCTCTTCCAACCTGCAAGTGAGTTTTTA
CCTATGATTAGCGAGGTGTACAAAAAGCTCAGTGAAAGTATTAAGGACATTGATGGTGCA
AGGATGGAAGATAACAAATTCTGTGTGTCCGTTCATTACCGCAATGTAGCACCACATGAC
TACGGAGAAGTTCATCAACGTGTGACTGCCGTCCTGAAGAATTACCCTTGTCTAAGGCTT
ACCCATGGGAGAAAGGTTCTTGAGGTTCGACCTGTGATAGACTGGAACAAGGGGAAAGCT
GTGGAATTTTTGCTGGAGTCACTTGGACTATGTGGGAAAGAAGATGTTCTTCCTATCTAT
GTTGGAGATGACAAGACTGATGAGGATGCATTCAAGGTTCTGAAGGCAAACAGCATTGGC
TTTGGAATTTTGGTGTCATCTGTGCCCAAGGATACTGATGCTTTCTATTCCGTACGGGAC
CCAGCTGAGGTGATGGAATTCCTGAAGAAACTGGCATCTTGGAAGGAGGAATCCACTTAA
GCAGAAGGGAGGAACATAACAGAATCGTTTTTTGAGGATATGGAGAAGTACCAACTATAA
ATACGAGCAAAATATACACTGCTAACAAATAAGTCTGGCCAAAATGTTTTTGATTTGGCA
TCCTATTATATAAGAGGCTCCCTAAACCACCCTTTTTTGGTCTCACTTTCATCTTATGTT
TCTGGGATTCTGAGACATTTCATTCTTTTATTAGTTCTGTTCCTTTAGTATATATAAAAT
ATATACACATGTATGCTGAAAAATTTTGGTTCCTGTCCCTGTCGTCTTAGGCAATTATTT
ATTCTACCGGCAAGTTGT