Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0550900-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:21618211:21620554:1 gene:Os10g0550900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Proline dehydrogenase description:Proline oxidase domain containing protein. (Os10t0550900-01)
Sequence

ATGGCCATCGCCTCCCGCATCCAGAAGCGCGTGCTTGCCTCCTTCGCCGCCGCCGCCGCA
GCCAAGCTCCCGGAGGCGGCCGTCGCGGCCGCCGGAGGCGCCGCAGAGGCGGTGGAGGAG
GTCGCGTCTTCCGTGCAGGAGCAGGTGCAGGCGCAGGGAGCGCAGGTGTTGGAGTTTGGG
GATACCGAGAGGCTGTTCGCCGGGGAGAGGTCGACGTCGCTGGTGCGCACGCTCGCCGTG
CTGCAGGCGCTGTCGGTGGGCCCGCTCGTGGACGTGGCGACGGCGGCGCTGAGGTCGCCG
GCGGTGGCCGGGAGCGCGGCGGGGCGCGCCGCGGCGAGGGCCACCGCGTACCAGCACTTC
TGCGCCGGGGAGACCGCCGAGGAGGCCGCCGCGGCGGTGCGCCGCCTCTGGCGCGGCGGC
ATGGGCGGGATCCTCGACTACGGCATCGAGGACGCCGAGGACGGCCCCGCCTGCGACCGC
AACGCCGCCGGATTCCTCGCCGCCATCGACGTCGCCGCCGCGCTGCCTCCTGGCTCGGCG
AGCGTGTGCATCAAGATCACGGCGCTGTGCCCGGTCGCGTTGCTGGAGAAGGCGAGTGAT
CTGCTGCGGTGGCAGCAGAAGCACCCGGCGACGAAGCTGCCATGGAAAGTGCACGGGTTC
CCGGTGCTGTGCGTCTCCAGCCCGCTGTACCTGACGGCGGCGGAGCCGCCGGCGCTGGAG
GCGGAGGAGGAGAGGGAGCTCGAGATGGCGCACGGGCGGCTGCTGGCGATCGGCGAGCGG
TGCGCGGAGTACGACATCCCGCTGCTGGTGGACGCCGAGTACGCCACCGTGCAGCCGGCG
ATCGACTACTTCACGTTCGCCGGCGCGCTGGCGTTCAACGGCGGCGGGAGGCCCATCGTG
CACGGCACCGTCCAGGCCTACCTCCGCGACGCGCGCGACCGGCTGGAGGCCATGGCGCGA
GCGGCGCAGGGCGAGCGCGTGTGCCTCGCGCTCAAGCTGGTCCGCGGCGCGTACCTGGCG
CGCGAGGCCCGCCTCGCGGCCTCCCTCGGCGTGCCGTCGCCGGTCCACCGCAGCATCCAG
GACACCCACGACTGCTACAACGGCTGCGCCGCGTTCCTCCTCGACCGCGTCCGCCGCGGC
GCCGCCGCCGTGACGCTCGCCACGCACAACGTCGAGTCCGGGCAGCTCGCCGCGGCGAGG
GCGCTGGAGCTCGGCATCGGCGGCGGCGGCGACCGCGGCCTGCAGTTCGCGCAGCTGATG
GGCATGGCGGATGGCCTCTCGCTCGGCCTCCGCAACGCCGGGTTCCAGGTGAGCAAGTAC
CTGCCGTACGGTCCAGTGGAGCAGATCATCCCGTACCTCATCAGACGAGCAGAGGAGAAC
AGGGGATTGCTCTCGTCTTCCTCCTTCGACAGACAGCTGCTCCGGAAGGAGCTTGTGAGG
AGGTTCAAGGCTGCAATGCTGGGACGTGAGTGA

Peptide Sequence

PEP ID

Os10t0550900-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:21618211:21620554:1 gene:Os10g0550900 transcript:Os10t0550900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Proline dehydrogenase description:Proline oxidase domain containing protein. (Os10t0550900-01)
Sequence

MAIASRIQKRVLASFAAAAAAKLPEAAVAAAGGAAEAVEEVASSVQEQVQAQGAQVLEFG
DTERLFAGERSTSLVRTLAVLQALSVGPLVDVATAALRSPAVAGSAAGRAAARATAYQHF
CAGETAEEAAAAVRRLWRGGMGGILDYGIEDAEDGPACDRNAAGFLAAIDVAAALPPGSA
SVCIKITALCPVALLEKASDLLRWQQKHPATKLPWKVHGFPVLCVSSPLYLTAAEPPALE
AEEERELEMAHGRLLAIGERCAEYDIPLLVDAEYATVQPAIDYFTFAGALAFNGGGRPIV
HGTVQAYLRDARDRLEAMARAAQGERVCLALKLVRGAYLAREARLAASLGVPSPVHRSIQ
DTHDCYNGCAAFLLDRVRRGAAAVTLATHNVESGQLAAARALELGIGGGGDRGLQFAQLM
GMADGLSLGLRNAGFQVSKYLPYGPVEQIIPYLIRRAEENRGLLSSSSFDRQLLRKELVR
RFKAAMLGRE

Transcript Sequence

Transcript ID

Os10t0550900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:21618211:21620554:1 gene:Os10g0550900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Proline dehydrogenase description:Proline oxidase domain containing protein. (Os10t0550900-01)
Sequence

GTCTTGCTAGTTTTGCACCGGAGAAAAATTCATTGCCTTCTTCTGAATCTCTTCTTCCTC
CGAGGAGAGCATTTCTTGCTTTGGTTTGTGTTTTCTTGGGTGTGTCAGGCACAAGTCCGA
CCTTCCATGGCCATCGCCTCCCGCATCCAGAAGCGCGTGCTTGCCTCCTTCGCCGCCGCC
GCCGCAGCCAAGCTCCCGGAGGCGGCCGTCGCGGCCGCCGGAGGCGCCGCAGAGGCGGTG
GAGGAGGTCGCGTCTTCCGTGCAGGAGCAGGTGCAGGCGCAGGGAGCGCAGGTGTTGGAG
TTTGGGGATACCGAGAGGCTGTTCGCCGGGGAGAGGTCGACGTCGCTGGTGCGCACGCTC
GCCGTGCTGCAGGCGCTGTCGGTGGGCCCGCTCGTGGACGTGGCGACGGCGGCGCTGAGG
TCGCCGGCGGTGGCCGGGAGCGCGGCGGGGCGCGCCGCGGCGAGGGCCACCGCGTACCAG
CACTTCTGCGCCGGGGAGACCGCCGAGGAGGCCGCCGCGGCGGTGCGCCGCCTCTGGCGC
GGCGGCATGGGCGGGATCCTCGACTACGGCATCGAGGACGCCGAGGACGGCCCCGCCTGC
GACCGCAACGCCGCCGGATTCCTCGCCGCCATCGACGTCGCCGCCGCGCTGCCTCCTGGC
TCGGCGAGCGTGTGCATCAAGATCACGGCGCTGTGCCCGGTCGCGTTGCTGGAGAAGGCG
AGTGATCTGCTGCGGTGGCAGCAGAAGCACCCGGCGACGAAGCTGCCATGGAAAGTGCAC
GGGTTCCCGGTGCTGTGCGTCTCCAGCCCGCTGTACCTGACGGCGGCGGAGCCGCCGGCG
CTGGAGGCGGAGGAGGAGAGGGAGCTCGAGATGGCGCACGGGCGGCTGCTGGCGATCGGC
GAGCGGTGCGCGGAGTACGACATCCCGCTGCTGGTGGACGCCGAGTACGCCACCGTGCAG
CCGGCGATCGACTACTTCACGTTCGCCGGCGCGCTGGCGTTCAACGGCGGCGGGAGGCCC
ATCGTGCACGGCACCGTCCAGGCCTACCTCCGCGACGCGCGCGACCGGCTGGAGGCCATG
GCGCGAGCGGCGCAGGGCGAGCGCGTGTGCCTCGCGCTCAAGCTGGTCCGCGGCGCGTAC
CTGGCGCGCGAGGCCCGCCTCGCGGCCTCCCTCGGCGTGCCGTCGCCGGTCCACCGCAGC
ATCCAGGACACCCACGACTGCTACAACGGCTGCGCCGCGTTCCTCCTCGACCGCGTCCGC
CGCGGCGCCGCCGCCGTGACGCTCGCCACGCACAACGTCGAGTCCGGGCAGCTCGCCGCG
GCGAGGGCGCTGGAGCTCGGCATCGGCGGCGGCGGCGACCGCGGCCTGCAGTTCGCGCAG
CTGATGGGCATGGCGGATGGCCTCTCGCTCGGCCTCCGCAACGCCGGGTTCCAGGTGAGC
AAGTACCTGCCGTACGGTCCAGTGGAGCAGATCATCCCGTACCTCATCAGACGAGCAGAG
GAGAACAGGGGATTGCTCTCGTCTTCCTCCTTCGACAGACAGCTGCTCCGGAAGGAGCTT
GTGAGGAGGTTCAAGGCTGCAATGCTGGGACGTGAGTGAAAGTGAGGTGGCAGAAGACTG
AGGCTGCCTTATCTGTTTGTGTTGCTACTGGGACTTGGGAGTGAAGCGATCGAGTCATGA
GTAGAAGTCGTAAACTTGTAAATACTCCTATCATTCTGAAAAAAGAACAGACATTGGTGT
ATCAATCGATAGTGATCTCTGAATAAACTGAATCATCAACG