Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0549500-00
CDS Infomation

cds chromosome:IRGSP-1.0:10:21520864:21524885:1 gene:Os10g0549500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Branched-chain-amino-acid aminotransferase. (Os10t0549500-00)
Sequence

AACAACAGTGACTCTATCTTATTATTTCGCCCGGAGGAAAATGCACTGAGAATGAGAACA
GGTGCAGAAAGAATGTGCATGCCTGCGCCTAGTGTTGAGCAGTTTGTGGATGCAGTAAAG
CAGACTGTTTTAGCAAACAAGAGATGGGTGCCTCCTACCGGTAAAGGTTCTTTATATATT
AGACCGCTACTTATGGGTAGTGGTGCTGTTCTTGGTCTTGCACCTGCTCCTGAGTATACG
TTCATTATATTTGTCTCCCCTGTGGGGAACTACTTTAAGGAAGGTTTAGCTCCAATAAAT
TTGATAGTTGAAGATAAGTTTCATCGTGCAACCCCTGGTGGAACTGGAAGTGTGAAGACC
ATAGGAAATTATGCCTCGGTCTTGATGGCACAAAAGATTGCAAAAGAAAAGGGCTATTCT
GATGTTCTCTACTTGGATGCTGTTCACAAAAAGTATCTTGAAGAAGTTTCTTCATGTAAT
ATTTTTGTTGTCAAGGGCAATGTCATTTCAACTCCAGCAGTAAAAGGAACAATATTGCCA
GGCATCACAAGGAAAAGTATCATTGATGTTGCTCTGAGCAAGGGTTTCCAGGTCGAGGAG
CGACTTGTGTCAGTAGACGAGCTGCTTGAAGCTGATGAGGTTTTCTGCACAGGAACTGCT
GTCGTAGTGTCTCCTGTGGGTAGTATTACCTATCAAGGGAAAAGGGTCGAATATGCTGGC
AACAAAGGAGTTGGTGTCGTGTCTCAGCAGCTATATACTTCATTGACAAGCCTGCAGATG
GGCCAGGCAGAAGATTGGCTAGGCTGGACTGTGCAACTGAGTTAG

Peptide Sequence

PEP ID

Os10t0549500-00
PEP Infomation

pep chromosome:IRGSP-1.0:10:21520864:21524885:1 gene:Os10g0549500 transcript:Os10t0549500-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Branched-chain-amino-acid aminotransferase. (Os10t0549500-00)
Sequence

NNSDSILLFRPEENALRMRTGAERMCMPAPSVEQFVDAVKQTVLANKRWVPPTGKGSLYI
RPLLMGSGAVLGLAPAPEYTFIIFVSPVGNYFKEGLAPINLIVEDKFHRATPGGTGSVKT
IGNYASVLMAQKIAKEKGYSDVLYLDAVHKKYLEEVSSCNIFVVKGNVISTPAVKGTILP
GITRKSIIDVALSKGFQVEERLVSVDELLEADEVFCTGTAVVVSPVGSITYQGKRVEYAG
NKGVGVVSQQLYTSLTSLQMGQAEDWLGWTVQLS

Transcript Sequence

Transcript ID

Os10t0549500-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:21520864:21524885:1 gene:Os10g0549500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Branched-chain-amino-acid aminotransferase. (Os10t0549500-00)
Sequence

CTGATGGCAACTCTTGCATATTTTCAGGAAGGCATCTGAGGTAGCTGATTTTGATTGGGA
GAACCTTGGTTTTGGAATCGTGCAGACCGACTACATGTATATCACAAAATGCGGACAGGA
CGGGAATTTTTCTGAGGGTGAAATGATTCCATTTGGACCTATAGCGCTGAACCCATCTTC
TGGAGTCCTTAATTACGGATAGGGATTGTTTGAAGGTCTAAAAGCATATAGAACAACAGT
GACTCTATCTTATTATTTCGCCCGGAGGAAAATGCACTGAGAATGAGAACAGGTGCAGAA
AGAATGTGCATGCCTGCGCCTAGTGTTGAGCAGTTTGTGGATGCAGTAAAGCAGACTGTT
TTAGCAAACAAGAGATGGGTGCCTCCTACCGGTAAAGGTTCTTTATATATTAGACCGCTA
CTTATGGGTAGTGGTGCTGTTCTTGGTCTTGCACCTGCTCCTGAGTATACGTTCATTATA
TTTGTCTCCCCTGTGGGGAACTACTTTAAGGAAGGTTTAGCTCCAATAAATTTGATAGTT
GAAGATAAGTTTCATCGTGCAACCCCTGGTGGAACTGGAAGTGTGAAGACCATAGGAAAT
TATGCCTCGGTCTTGATGGCACAAAAGATTGCAAAAGAAAAGGGCTATTCTGATGTTCTC
TACTTGGATGCTGTTCACAAAAAGTATCTTGAAGAAGTTTCTTCATGTAATATTTTTGTT
GTCAAGGGCAATGTCATTTCAACTCCAGCAGTAAAAGGAACAATATTGCCAGGCATCACA
AGGAAAAGTATCATTGATGTTGCTCTGAGCAAGGGTTTCCAGGTCGAGGAGCGACTTGTG
TCAGTAGACGAGCTGCTTGAAGCTGATGAGGTTTTCTGCACAGGAACTGCTGTCGTAGTG
TCTCCTGTGGGTAGTATTACCTATCAAGGGAAAAGGGTCGAATATGCTGGCAACAAAGGA
GTTGGTGTCGTGTCTCAGCAGCTATATACTTCATTGACAAGCCTGCAGATGGGCCAGGCA
GAAGATTGGCTAGGCTGGACTGTGCAACTGAGTTAG