Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0548400-00
CDS Infomation

cds chromosome:IRGSP-1.0:10:21459864:21460642:1 gene:Os10g0548400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to F25C20.9. (Os10t0548400-00)
Sequence

AGTGGGCCGCGAATCTGCGGCCCACGAGGAATTTTTTTTTTTTTGACGCTACTGGTTTGG
GAGTTTGACACTGTGACGAGTAGAGGTCAAGTTGGTGGGGAATCTAGGCGGCGGAGGCGG
TGGAGCGTGTCGGGGAGAAGCCGCCGGCGGCGAGGGGAGATGGAGGCGACGGTGGACGAG
CTGAGCGAGGCGTACCAGGAGTTCGTGGCGGCGGCGGCGGCGGTGGTGGAGGCGCGGGGG
CAGTCGGGGGGAGAGAAGAACGCGGCCACGGACGCGGCGCTCGAGGCGTTCAAGCAGCGG
TGGGAGCTCTTCCGCGTCGCCTGCGACCACGCGGAGGAGCTCGTCGAGTCGATCCGCCAG
CGAATCGGTTCCGAGTGCCTCGTCGACGAGGCCACCGGCGCCTCCTCCTCCTCCTCCGCG
GCGCTGGCCGCCCCCGGCATCAAGCCCATCAGCGCCGTCCGCCTCGAGCAGATGAGCAAG
GCCGTCCGCTGGCTCGTCATCGAGCTCCAGCACGGCGCCGGAGGTGCCTCCGCCGCGGGT
CCCGGCGGCGGGGGCGGCGCCGCGGCTGCGGCTTCCGGCGTTGCGGGGCAGCACGGCCAC
GGCGGGGTCGACACGCGCTTCCCCGAGGACGGCGCCCAGTAG

Peptide Sequence

PEP ID

Os10t0548400-00
PEP Infomation

pep chromosome:IRGSP-1.0:10:21459864:21460642:1 gene:Os10g0548400 transcript:Os10t0548400-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to F25C20.9. (Os10t0548400-00)
Sequence

SGPRICGPRGIFFFLTLLVWEFDTVTSRGQVGGESRRRRRWSVSGRSRRRRGEMEATVDE
LSEAYQEFVAAAAAVVEARGQSGGEKNAATDAALEAFKQRWELFRVACDHAEELVESIRQ
RIGSECLVDEATGASSSSSAALAAPGIKPISAVRLEQMSKAVRWLVIELQHGAGGASAAG
PGGGGGAAAAASGVAGQHGHGGVDTRFPEDGAQ

Transcript Sequence

Transcript ID

Os10t0548400-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:21459864:21460642:1 gene:Os10g0548400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to F25C20.9. (Os10t0548400-00)
Sequence

AGTGGGCCGCGAATCTGCGGCCCACGAGGAATTTTTTTTTTTTTGACGCTACTGGTTTGG
GAGTTTGACACTGTGACGAGTAGAGGTCAAGTTGGTGGGGAATCTAGGCGGCGGAGGCGG
TGGAGCGTGTCGGGGAGAAGCCGCCGGCGGCGAGGGGAGATGGAGGCGACGGTGGACGAG
CTGAGCGAGGCGTACCAGGAGTTCGTGGCGGCGGCGGCGGCGGTGGTGGAGGCGCGGGGG
CAGTCGGGGGGAGAGAAGAACGCGGCCACGGACGCGGCGCTCGAGGCGTTCAAGCAGCGG
TGGGAGCTCTTCCGCGTCGCCTGCGACCACGCGGAGGAGCTCGTCGAGTCGATCCGCCAG
CGAATCGGTTCCGAGTGCCTCGTCGACGAGGCCACCGGCGCCTCCTCCTCCTCCTCCGCG
GCGCTGGCCGCCCCCGGCATCAAGCCCATCAGCGCCGTCCGCCTCGAGCAGATGAGCAAG
GCCGTCCGCTGGCTCGTCATCGAGCTCCAGCACGGCGCCGGAGGTGCCTCCGCCGCGGGT
CCCGGCGGCGGGGGCGGCGCCGCGGCTGCGGCTTCCGGCGTTGCGGGGCAGCACGGCCAC
GGCGGGGTCGACACGCGCTTCCCCGAGGACGGCGCCCAGTAGGTATTTATTTTGCTCAAT
TATCTTGTACTAGTAGTATTTTCTTCCAAAGAAAACAAATTACTGGTGGTATCTCTGTGT
AATCGTCTAAGAATTGAAGCATTAGAGCTTGTGATCGATATTCTAAAAAAAATTGAGCT