Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0548000-02
CDS Infomation

cds chromosome:IRGSP-1.0:10:21440286:21443621:-1 gene:Os10g0548000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os10t0548000-01);Similar to Short-chain dehydrogenase Tic32. (Os10t0548000-02)
Sequence

ATGTGGTTTTTCAACTTCAACCGAAATGGCCCCTCTGGCTTCTCCGGCGCCTCCACCGCC
GAGGAGGTCACCGCCGGCGTCGACGCCCGGGGCTTGGCCGCCGTCGTCACAGGCGCGTCG
AGCGGCATCGGGCTGGAGACGACGCGCGTGTTGGCGCTGCGCGGCGTGCGCGTCGTCATG
GCCGTGCGCAACGTCGCCGCCGGGCACAAGGCCCGCGAGGCGATCCGGGCGGAGATCCAC
GGCGCCATAGTCCATGTGCTGGAGATGGACCTCAGCTCCATGGATTCGGTGAGGAGGTTT
GCCTCCGAGTTTGACTCTCTGAACCTACCTCTCAACATACTCATCAATAACGCTGGAATC
CTGTCCAAGGACTGCATACGCTCCATTGACGGCCTAGAATTGCATTTTGCAACTAATCAC
ATTGGCCATTTTCTTCTAACGAATCTTTTACTGGAGAACATGAAGAGCACAAGTAGGACA
ACTGGTGTCGAAGGAAGGATCATAAATGTGTCGTCTTCGGGGCACATTTTGACCTATCCT
GAAGGGATATGTTTCGATAGTGTAAAAGATCTTTCGAGATTCTCCACTTATATTGCTTAC
GGCCAGTCCAAGCTTGCCAACATTTTGCACTCTACCGAGCTTGCACGAATTCTGAAGGGA
GATGGTGTGAACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGAACCAACCTATTC
AAGAACTGGACTATGGCTAATGCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACT
GTAGAACAGGGTGCTGCAACGACATGTTATGTGGCATTACATCCTCAAGTTACTGGAATA
AGTGGGAAGTACTTCAGCAACTGCAATTTAGAGACCCCAAGCTCACAGGCTTCAAATGCA
GAGTTGGCCAAGAAACTATGGGAATTTAGCTCCAACATTGTGTCGGCTGCCAAACTGTAG

Peptide Sequence

PEP ID

Os10t0548000-02
PEP Infomation

pep chromosome:IRGSP-1.0:10:21440286:21443621:-1 gene:Os10g0548000 transcript:Os10t0548000-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os10t0548000-01);Similar to Short-chain dehydrogenase Tic32. (Os10t0548000-02)
Sequence

MWFFNFNRNGPSGFSGASTAEEVTAGVDARGLAAVVTGASSGIGLETTRVLALRGVRVVM
AVRNVAAGHKAREAIRAEIHGAIVHVLEMDLSSMDSVRRFASEFDSLNLPLNILINNAGI
LSKDCIRSIDGLELHFATNHIGHFLLTNLLLENMKSTSRTTGVEGRIINVSSSGHILTYP
EGICFDSVKDLSRFSTYIAYGQSKLANILHSTELARILKGDGVNISANAIHPGFVGTNLF
KNWTMANAVVNTIGRIVCKTVEQGAATTCYVALHPQVTGISGKYFSNCNLETPSSQASNA
ELAKKLWEFSSNIVSAAKL

Transcript Sequence

Transcript ID

Os10t0548000-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:21440286:21443621:-1 gene:Os10g0548000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os10t0548000-01);Similar to Short-chain dehydrogenase Tic32. (Os10t0548000-02)
Sequence

GTTGGAAGAAGAAGAGGAAGTGGTTGCGCCGACGACGAGGTGAGCGGGTTGACGGAGGAG
GAGGCAGCGCGCGCCGGCTTCGGGTGTCGTTGTCCCTGCTCGCCAGGTGCTCGTTGCTCC
TCCAGACTGCAGCTAGCGTGACGAGAAACATCTTCTTGAGACGATATCAGAAGGTTGTCG
CTGACATACTGCTGAGCAGAAAACCAGCACCCATCGGCTTAGTACCTGTCTGCTCTGCTG
TCTCAGCCTCTCAGGTTGCAAACCCCATATCCCAGAGCTCGACGCCACCCATGTGGTTTT
TCAACTTCAACCGAAATGGCCCCTCTGGCTTCTCCGGCGCCTCCACCGCCGAGGAGGTCA
CCGCCGGCGTCGACGCCCGGGGCTTGGCCGCCGTCGTCACAGGCGCGTCGAGCGGCATCG
GGCTGGAGACGACGCGCGTGTTGGCGCTGCGCGGCGTGCGCGTCGTCATGGCCGTGCGCA
ACGTCGCCGCCGGGCACAAGGCCCGCGAGGCGATCCGGGCGGAGATCCACGGCGCCATAG
TCCATGTGCTGGAGATGGACCTCAGCTCCATGGATTCGGTGAGGAGGTTTGCCTCCGAGT
TTGACTCTCTGAACCTACCTCTCAACATACTCATCAATAACGCTGGAATCCTGTCCAAGG
ACTGCATACGCTCCATTGACGGCCTAGAATTGCATTTTGCAACTAATCACATTGGCCATT
TTCTTCTAACGAATCTTTTACTGGAGAACATGAAGAGCACAAGTAGGACAACTGGTGTCG
AAGGAAGGATCATAAATGTGTCGTCTTCGGGGCACATTTTGACCTATCCTGAAGGGATAT
GTTTCGATAGTGTAAAAGATCTTTCGAGATTCTCCACTTATATTGCTTACGGCCAGTCCA
AGCTTGCCAACATTTTGCACTCTACCGAGCTTGCACGAATTCTGAAGGGAGATGGTGTGA
ACATTTCAGCAAATGCGATCCATCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGA
CTATGGCTAATGCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAGG
GTGCTGCAACGACATGTTATGTGGCATTACATCCTCAAGTTACTGGAATAAGTGGGAAGT
ACTTCAGCAACTGCAATTTAGAGACCCCAAGCTCACAGGCTTCAAATGCAGAGTTGGCCA
AGAAACTATGGGAATTTAGCTCCAACATTGTGTCGGCTGCCAAACTGTAGTTTGAGTTAT
TCATATATGCATGCGCTACATTTTATTTCGTGTAAGCCGAACATAAAATTTTCATAGAAA
GTCTACAAATAAAGAGAGTGTAGTTCCTCCC