Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os10t0547900-01
CDS Infomation	cds chromosome:IRGSP-1.0:10:21435154:21439354:-1 gene:Os10g0547900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Short-chain dehydrogenase Tic32. (Os10t0547900-01)
Sequence	ATGTGCTGGTTCAACCGCAAAGGCCCCTCCGGCTTCTCCGGCGCCTCCACCGCCGAGGAG GTCACCGCCGGCGTCGACGCTCGGGGCTTGGTCGCCGTCATCACAGGTGCGTCGAGCGGC ATCGGGCTGGAGACGGCGCGCGTCATGGCGCTGCGCGGCGTGCGCGTCGTCATGGCCGTG CGCAACGTCGCCGCCGGGCACAGGGCCAGCGAGGCGATCCGGGCTGAGATCCCCGGCGCC GGTATCCATGTGCTGGAGATGGACCTCAGCTCCATGGATTCGGTGAGGAGATTTGCCACC GAGTTTGAGGCTCTGAACCTACCTCTCAACATACTCATTAATAATGCTGGAATCATGACA AGGAACTGCACACGCTCCATTGACGGCCTGGAATTGCAATTTGCAACAAATCACATCGGC CACTTTCTTCTAACAAATCTCTTGCTGGAGAACATGAAGAGGACAAGTAGCAAAACTGGT GTTGAAGGAAGGATCGTAAATGTGTCGTCTTCAGCACATTTTGTGACCTATCCTAAAGGG ATATGTTTCGATAAGGTGAAGGAGCCTTCAAGATTCATCAGTCTTATTGCTTATGGCCAG TCTAAGCTTGCCAACATTTTGCACTCAACTGAGCTGTCACGAGTTCTGAAGGAAGATGGT GTGAACATTTCGGCTAATGCAGTCCATCCTGGTGTTGTTACAACCAACCTGTTCAGGCAC AGGACTATTATAAATGCTCTAGTGAAGTCCATTGGAAGATTCGTACACAAAACTGTAGAA CAGGGTGCTGCAACGACATGTTATGTGGCACTACATTCTCAATTCACCGGGATAAGTGGG AAGTACTTCAGCAACTGCAATTTAGATACCCCAAGCTCACAGGCTTCAAATGCAGAGTTG GCAAATAAACTATGGGAATTTAGCTCCAAGATTGTGTCCTCTTGA

Peptide Sequence

PEP ID	Os10t0547900-01
PEP Infomation	pep chromosome:IRGSP-1.0:10:21435154:21439354:-1 gene:Os10g0547900 transcript:Os10t0547900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Short-chain dehydrogenase Tic32. (Os10t0547900-01)
Sequence	MCWFNRKGPSGFSGASTAEEVTAGVDARGLVAVITGASSGIGLETARVMALRGVRVVMAV RNVAAGHRASEAIRAEIPGAGIHVLEMDLSSMDSVRRFATEFEALNLPLNILINNAGIMT RNCTRSIDGLELQFATNHIGHFLLTNLLLENMKRTSSKTGVEGRIVNVSSSAHFVTYPKG ICFDKVKEPSRFISLIAYGQSKLANILHSTELSRVLKEDGVNISANAVHPGVVTTNLFRH RTIINALVKSIGRFVHKTVEQGAATTCYVALHSQFTGISGKYFSNCNLDTPSSQASNAEL ANKLWEFSSKIVSS

Transcript Sequence

Transcript ID	Os10t0547900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:10:21435154:21439354:-1 gene:Os10g0547900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Short-chain dehydrogenase Tic32. (Os10t0547900-01)
Sequence	GAGGCACACGTCTCGGCGTTTTCCTCCGTTCGGCAGCACAACCAGAACCGTCTCCGGTCT CTCCTTCCCGGCGATGCCCATGGCGACGACGAAGGGTGCTCGCGACGGAAGAGAGGGTTC GTAGGATCAGCGAACTCCTCAGGCGAAAAGAGAGAAGAAAATAGTACTATCACTCAGCCT CGACGCGTCGAGGACCACCATCTGTTAACCTGTTGGTGGGGTGGGTGGCTCTTTGCAGGA GACGTTGGAACTTGGAAGTCCACGGCACCGTCGACGGCGAGGCGATCGGGCGGACGGAGG AGGAGGCGCGCCGCTGCGCCGGGCTCCGGCTTCAGAGCGTATGACCCGCCGGATCCGTTG TGTTGTCTGTCCGTGCCCGCCAGGTGTTCGATACAATGCCCCAGTGCGCTTTGCTTCCCT TCTGAGTGAAGAAGAAGAATTGTTATAAAGGGTGATGCTTTTGGAAGCCAGTACATACTT CTGAGTTAGTATACCCGTTTTCTTCAGAAATGAAATTCCACTTCGTCAACGATATATACT ACTACTATATGACTTTGAAGAAAAAAAATGATAATTTGATATACTTTGTCCACCGGTTGA CATTGGCACACCTGGAACTTGGAAGTGGTTTGTGATTTGACAATCAATATCAGCATCTCC ATTGCCATCGGCTACAGTTGTAACTTGGAAGCGGTTTCTAGTTTGTCAATGCATATCAGC ATCTCCATCGCCATCGGCTGCAGTTTTTCCTCCATACTGTCGTCTGTAGCATGCTGAAGA GCATTATTCTTTTGCACCCAGCCACCCACAGAGCTGTAGCTGAACAGAAAACCAGCACCC CACCTCGGCTTTACTTCTCTGCTCTGCTCATCGGCTGTGTGAGGTGTTCTTATCTTATTG AAGTCTTCTGGGAATTTATGGCCATCTGGTGCCGAAGCTGAACTCAGCTTGCAAACACCA GTACGCCACTATTCCCTGAGCTCGACGTACGCCAGCTTGGTACGGAGTCGGCGATGTGCT GGTTCAACCGCAAAGGCCCCTCCGGCTTCTCCGGCGCCTCCACCGCCGAGGAGGTCACCG CCGGCGTCGACGCTCGGGGCTTGGTCGCCGTCATCACAGGTGCGTCGAGCGGCATCGGGC TGGAGACGGCGCGCGTCATGGCGCTGCGCGGCGTGCGCGTCGTCATGGCCGTGCGCAACG TCGCCGCCGGGCACAGGGCCAGCGAGGCGATCCGGGCTGAGATCCCCGGCGCCGGTATCC ATGTGCTGGAGATGGACCTCAGCTCCATGGATTCGGTGAGGAGATTTGCCACCGAGTTTG AGGCTCTGAACCTACCTCTCAACATACTCATTAATAATGCTGGAATCATGACAAGGAACT GCACACGCTCCATTGACGGCCTGGAATTGCAATTTGCAACAAATCACATCGGCCACTTTC TTCTAACAAATCTCTTGCTGGAGAACATGAAGAGGACAAGTAGCAAAACTGGTGTTGAAG GAAGGATCGTAAATGTGTCGTCTTCAGCACATTTTGTGACCTATCCTAAAGGGATATGTT TCGATAAGGTGAAGGAGCCTTCAAGATTCATCAGTCTTATTGCTTATGGCCAGTCTAAGC TTGCCAACATTTTGCACTCAACTGAGCTGTCACGAGTTCTGAAGGAAGATGGTGTGAACA TTTCGGCTAATGCAGTCCATCCTGGTGTTGTTACAACCAACCTGTTCAGGCACAGGACTA TTATAAATGCTCTAGTGAAGTCCATTGGAAGATTCGTACACAAAACTGTAGAACAGGGTG CTGCAACGACATGTTATGTGGCACTACATTCTCAATTCACCGGGATAAGTGGGAAGTACT TCAGCAACTGCAATTTAGATACCCCAAGCTCACAGGCTTCAAATGCAGAGTTGGCAAATA AACTATGGGAATTTAGCTCCAAGATTGTGTCCTCTTGATGTGGCTATCAAATTATAGTTT GTGTTATGCATCATGTGCTACAGTCTATTTTCTGCAAGTTTGAACATAAAATTTTCACAT AAACAAACAAAGAGATCCGTGCAATTCCTCCAAGACTAGTTAGAACAATCTGAATTGTAA TATATCCGCCTCAGTTTAGTTTAGAAGTTCTTCCTATAATCATGGGCTGGCTCTGGCTAT GTATTTCTTAAACTAATGTTTGGACTTTGGAGGCCCACCTCACCTCTTTATGTAAGCCTT ACGCTTCATGGACC