Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0546900-00
CDS Infomation

cds chromosome:IRGSP-1.0:10:21386647:21387625:1 gene:Os10g0546900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Zinc finger, C3HC4 type family protein, expressed. (Os10t0546900-00)
Sequence

ATGGTTAGCAAATGCCACAAGCAAAACGAGGCTATCAACTGCGCAAATGCCACCTATACC
CAAGATAAAAACTCTCCTCCGCCTCCTCGCATTCCCAAAGCCCAAACGCCCGCAGGAAGC
TGCACCCAGAGCGCGTCGGCGTCGCGCACACAGGGCGGCCAGAGCATGGCCACGGCGCCG
CGCGCGAGGCGCCTGGCCGCCGCCGACGTGCAGCCGGCCACGCCGGCGGTCGGCCCAGCG
TCCGGCGGGCGGCCCCAGTTCAACCTCTCGTCGGGCGCGGCCACCGCCGTGGTATTCGTC
TCCATCGTCCTCTGCTTCATCCTGCTCTGCACCTACTGCCGCTGCGCCAGGCAGCGCGCC
ATCGCCGGCGCGCGCAGCCGCGTCATGCGCGAGATCCGGGAGCGCGTCCCGGGCGTCCTC
CTCCTCCGCCCCGCCGCCGCCGCCGCCGCGCTGCCCGTCCTCCCCTACTCCGCCGCCGCC
GCCGCCGCGGGCGCCAAGAAGGGGCCGCTCGTCGAGGACTGCCCCGTCTGCCTCGAGGCC
TTCGCCGGCGACGACGGCGTCAAGGTCGTCCCCGCGTGCGGCCACGTGTTCCACGCCGCC
TGCATCGACCAGTGGCTCGCCGTGCGGAACTCCTGCCCCGTCTGCCGCTGCGCCGTCGTC
TGCTACTACGCCGACCGCGCGAGGGACACGGCGGTGGTGGTCGACGACGACGACGACGAC
CAGGAGGTCGTCCTGGAGCGCGTGGTTGCGATGATCGAGGCGATACGAGAAGAACAGAGG
GAAGAGGAGGCGGCGGCGAGGCGCGCGCCGGCGAGCGATGGCGGGGGAGGCGAGGGGTTG
ATGACGTCATGA

Peptide Sequence

PEP ID

Os10t0546900-00
PEP Infomation

pep chromosome:IRGSP-1.0:10:21386647:21387625:1 gene:Os10g0546900 transcript:Os10t0546900-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Zinc finger, C3HC4 type family protein, expressed. (Os10t0546900-00)
Sequence

MVSKCHKQNEAINCANATYTQDKNSPPPPRIPKAQTPAGSCTQSASASRTQGGQSMATAP
RARRLAAADVQPATPAVGPASGGRPQFNLSSGAATAVVFVSIVLCFILLCTYCRCARQRA
IAGARSRVMREIRERVPGVLLLRPAAAAAALPVLPYSAAAAAAGAKKGPLVEDCPVCLEA
FAGDDGVKVVPACGHVFHAACIDQWLAVRNSCPVCRCAVVCYYADRARDTAVVVDDDDDD
QEVVLERVVAMIEAIREEQREEEAAARRAPASDGGGGEGLMTS

Transcript Sequence

Transcript ID

Os10t0546900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:21386647:21387625:1 gene:Os10g0546900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Zinc finger, C3HC4 type family protein, expressed. (Os10t0546900-00)
Sequence

ATGGTTAGCAAATGCCACAAGCAAAACGAGGCTATCAACTGCGCAAATGCCACCTATACC
CAAGATAAAAACTCTCCTCCGCCTCCTCGCATTCCCAAAGCCCAAACGCCCGCAGGAAGC
TGCACCCAGAGCGCGTCGGCGTCGCGCACACAGGGCGGCCAGAGCATGGCCACGGCGCCG
CGCGCGAGGCGCCTGGCCGCCGCCGACGTGCAGCCGGCCACGCCGGCGGTCGGCCCAGCG
TCCGGCGGGCGGCCCCAGTTCAACCTCTCGTCGGGCGCGGCCACCGCCGTGGTATTCGTC
TCCATCGTCCTCTGCTTCATCCTGCTCTGCACCTACTGCCGCTGCGCCAGGCAGCGCGCC
ATCGCCGGCGCGCGCAGCCGCGTCATGCGCGAGATCCGGGAGCGCGTCCCGGGCGTCCTC
CTCCTCCGCCCCGCCGCCGCCGCCGCCGCGCTGCCCGTCCTCCCCTACTCCGCCGCCGCC
GCCGCCGCGGGCGCCAAGAAGGGGCCGCTCGTCGAGGACTGCCCCGTCTGCCTCGAGGCC
TTCGCCGGCGACGACGGCGTCAAGGTCGTCCCCGCGTGCGGCCACGTGTTCCACGCCGCC
TGCATCGACCAGTGGCTCGCCGTGCGGAACTCCTGCCCCGTCTGCCGCTGCGCCGTCGTC
TGCTACTACGCCGACCGCGCGAGGGACACGGCGGTGGTGGTCGACGACGACGACGACGAC
CAGGAGGTCGTCCTGGAGCGCGTGGTTGCGATGATCGAGGCGATACGAGAAGAACAGAGG
GAAGAGGAGGCGGCGGCGAGGCGCGCGCCGGCGAGCGATGGCGGGGGAGGCGAGGGGTTG
ATGACGTCATGATGACGCACGCATCCCTGGGTTGTGCAGGTGCAGCTAACTTCACTAGGT
GAGTTCGGTTTGTAGCTTTGGTGTGGCACACTGACATTAGAGAGATAGAAGGGATTAAAA
TTACCCCATGTTTTTGCAG