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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0545300-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:21311755:21315379:-1 gene:Os10g0545300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, CCHC retroviral-type domain containing protein. (Os10t0545300-01)
Sequence

ATGAGCAGCCGCAGCCCGCCACCAAAGGACCGCAGGATTCGTACTGAGCGTACCTCATAC
CGTGATGCGCCATACAGGAGAGACAGCCGCCGTGGTCCTAGCAGATTTCCTAATGATTTG
TGCAACAATTGTAAGCGTCCAGGACATTTTGCTAGAGATTGTCCAAATGTGGCTCTTTGC
CATGCATGTGGGCTTCCAGGGCACATTGCAGCAGAGTGTTCTTCCAAAGATCTCTGCTGG
AACTGCAAAGAACCTGGCCACATGGCTAACAGCTGCCCAAATGAAGGGATATGCCGCAAC
TGTGGCAAGTCGGGTCACATTGCAAGAGAATGCAGTGCTCCACCAATGCTGCCAGGTGAA
ATGAGGCTTTGCAGCAACTGCTACAAACCAGGGCACCTTGCTGCGGAATGCACCAATGAG
AAGGCCTGCAACAACTGTAGGAAGAGTGGCCATCTTGCTCGTAACTGCCCTAACGAGCCC
GTCTGCAACCTATGCAACGTGTCAGGACATTTGGCCCGAGAGTGCCCCAAATCTGATGCT
ATCAATGAGAGGGGTGGGCCTCCTCCCTTCCGTGGTGGATACAGTGATGTGGTCTGCCGT
GCTTGCAATCAGGTTGGTCATATGAGCCGTGATTGCATGGCCGGTGCGTTCATGATCTGC
CACAACTGCGGTGGTCGTGGTCACATGGCTTATGAGTGCCCATCTGGGAGGCTTATGGAT
CGGTTTCCCCCTCGCCGTTTTTGA

Peptide Sequence

PEP ID

Os10t0545300-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:21311755:21315379:-1 gene:Os10g0545300 transcript:Os10t0545300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, CCHC retroviral-type domain containing protein. (Os10t0545300-01)
Sequence

MSSRSPPPKDRRIRTERTSYRDAPYRRDSRRGPSRFPNDLCNNCKRPGHFARDCPNVALC
HACGLPGHIAAECSSKDLCWNCKEPGHMANSCPNEGICRNCGKSGHIARECSAPPMLPGE
MRLCSNCYKPGHLAAECTNEKACNNCRKSGHLARNCPNEPVCNLCNVSGHLARECPKSDA
INERGGPPPFRGGYSDVVCRACNQVGHMSRDCMAGAFMICHNCGGRGHMAYECPSGRLMD
RFPPRRF

Transcript Sequence

Transcript ID

Os10t0545300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:21311755:21315379:-1 gene:Os10g0545300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, CCHC retroviral-type domain containing protein. (Os10t0545300-01)
Sequence

CGCCACGCTTCTCCTCCTCTTCCTATCCCAATCCACTCGGCGACCCCCCTCGCCGTCGCC
GCGCTGCGCCGGCGAGCGCCACGGGAGCAGCAGCCCTCGCCGCTCCGCGGCTAGCTAGCT
CGTCTCCTCGTCCGCCTCGCGCCTGCTGGAGATCCGCCCCCCGACCCCCGTGGAAGGAAG
GAAGAAGGGAGGGTTGTAACAGCCTAACAGGTTGTGGGAGTCTTGGAGGTGCTGGTTTTG
TGGTGTGGTGTTCGCAGTTTGGTTGGAGCTTGGAGATTTAGAAGGAAGGTTTGACGATGA
GCAGCCGCAGCCCGCCACCAAAGGACCGCAGGATTCGTACTGAGCGTACCTCATACCGTG
ATGCGCCATACAGGAGAGACAGCCGCCGTGGTCCTAGCAGATTTCCTAATGATTTGTGCA
ACAATTGTAAGCGTCCAGGACATTTTGCTAGAGATTGTCCAAATGTGGCTCTTTGCCATG
CATGTGGGCTTCCAGGGCACATTGCAGCAGAGTGTTCTTCCAAAGATCTCTGCTGGAACT
GCAAAGAACCTGGCCACATGGCTAACAGCTGCCCAAATGAAGGGATATGCCGCAACTGTG
GCAAGTCGGGTCACATTGCAAGAGAATGCAGTGCTCCACCAATGCTGCCAGGTGAAATGA
GGCTTTGCAGCAACTGCTACAAACCAGGGCACCTTGCTGCGGAATGCACCAATGAGAAGG
CCTGCAACAACTGTAGGAAGAGTGGCCATCTTGCTCGTAACTGCCCTAACGAGCCCGTCT
GCAACCTATGCAACGTGTCAGGACATTTGGCCCGAGAGTGCCCCAAATCTGATGCTATCA
ATGAGAGGGGTGGGCCTCCTCCCTTCCGTGGTGGATACAGTGATGTGGTCTGCCGTGCTT
GCAATCAGGTTGGTCATATGAGCCGTGATTGCATGGCCGGTGCGTTCATGATCTGCCACA
ACTGCGGTGGTCGTGGTCACATGGCTTATGAGTGCCCATCTGGGAGGCTTATGGATCGGT
TTCCCCCTCGCCGTTTTTGAGTGATTTTCCAAGTGCTCAATCAGATGACTCTTCGTTGGG
ACCGGCATTATGAATAATCATATCTCGTGCTTTATGCCTTAAGAATGTTAGTGTATTTCA
GATACTTCAGTTTTCATAGTTTGTCAGCTTACTTGTATTTGTCGGTTCTGCTGTTTAACT
GCGATACTCGTTGATCGGTGAGGATGAATTCCAGATGGGATACTTGTTTTAATTCCTACA
AACTTGAAGTTAGTCTT