Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0544600-02
CDS Infomation

cds chromosome:IRGSP-1.0:10:21271776:21276797:1 gene:Os10g0544600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os10t0544600-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os10t0544600-02)
Sequence

ATGGACGCGTCTCCGAGCTCCTCGTCGTCGTCTCCTGTGGCGCCGGAGGTGGTGCAATGG
GCCGGCGGCGCCGACGGCTTTGGCTCGGCGGCGATCGGCTTCGCGTGCAGGGTGCTCTGC
GCCGTCGCCACCTGCGTCTTCGCCGCAGTGGGGTCGGTGGTCGGGGCGGTGACCGGGAGC
GCGATCGGGCTGGCGACGGAGAGCGGAATGCTGCGCGGCGCCGGCATCGGCGCCATCTCC
GGCGCCGTCTTCTCCATCGAGGTCGCCGAGTCGTCGCGCGACCTCTGGCACTCCAGCGAC
TCCGCCGTCTGGTGCCTCGTCTACATGGTCGACATCATCTCCAGCCTCCTGAGTGGAAGG
CTGGTGCGGGAGAAGGTGGGTCCCGCGGTTCAGAGCGCGGTTCAGAGTCAGATAAGCGCC
ATCAGCTCGCCGTTCGCCGAGACCAGCGACCTGTTCGAGACCGGCGGCACCAAGGGTTTA
CCGGCGGACACGCTCCGCCGGCTGCCGGCGATCAAGATCACCGGCGACAACGCCGTCGAC
TCCGCCGGCGAGCCCATCTGCTGCTCCGTGTGCCTCCAGGATTTCCGCGTAGGTGAGATG
GCAAGAAGGCTACCAAGCTGCCGGCACGTGTTTCACGTGCCGTGCATCGACTGCTGGCTG
GTGAGGCACGGCTCCTGCCCGCTGTGCCGGCGAGACATCTGA

Peptide Sequence

PEP ID

Os10t0544600-02
PEP Infomation

pep chromosome:IRGSP-1.0:10:21271776:21276797:1 gene:Os10g0544600 transcript:Os10t0544600-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os10t0544600-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os10t0544600-02)
Sequence

MDASPSSSSSSPVAPEVVQWAGGADGFGSAAIGFACRVLCAVATCVFAAVGSVVGAVTGS
AIGLATESGMLRGAGIGAISGAVFSIEVAESSRDLWHSSDSAVWCLVYMVDIISSLLSGR
LVREKVGPAVQSAVQSQISAISSPFAETSDLFETGGTKGLPADTLRRLPAIKITGDNAVD
SAGEPICCSVCLQDFRVGEMARRLPSCRHVFHVPCIDCWLVRHGSCPLCRRDI

Transcript Sequence

Transcript ID

Os10t0544600-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:21271776:21276797:1 gene:Os10g0544600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os10t0544600-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os10t0544600-02)
Sequence

TTGTTGTTGTTGGTTTGGTTTGCGAGTCTGCAACCAATGGACGCGTCTCCGAGCTCCTCG
TCGTCGTCTCCTGTGGCGCCGGAGGTGGTGCAATGGGCCGGCGGCGCCGACGGCTTTGGC
TCGGCGGCGATCGGCTTCGCGTGCAGGGTGCTCTGCGCCGTCGCCACCTGCGTCTTCGCC
GCAGTGGGGTCGGTGGTCGGGGCGGTGACCGGGAGCGCGATCGGGCTGGCGACGGAGAGC
GGAATGCTGCGCGGCGCCGGCATCGGCGCCATCTCCGGCGCCGTCTTCTCCATCGAGGTC
GCCGAGTCGTCGCGCGACCTCTGGCACTCCAGCGACTCCGCCGTCTGGTGCCTCGTCTAC
ATGGTCGACATCATCTCCAGCCTCCTGAGTGGAAGGCTGGTGCGGGAGAAGGTGGGTCCC
GCGGTTCAGAGCGCGGTTCAGAGTCAGATAAGCGCCATCAGCTCGCCGTTCGCCGAGACC
AGCGACCTGTTCGAGACCGGCGGCACCAAGGGTTTACCGGCGGACACGCTCCGCCGGCTG
CCGGCGATCAAGATCACCGGCGACAACGCCGTCGACTCCGCCGGCGAGCCCATCTGCTGC
TCCGTGTGCCTCCAGGATTTCCGCGTAGGTGAGATGGCAAGAAGGCTACCAAGCTGCCGG
CACGTGTTTCACGTGCCGTGCATCGACTGCTGGCTGGTGAGGCACGGCTCCTGCCCGCTG
TGCCGGCGAGACATCTGATCGATCGTGATCAAAATCTCGCATCTGATGAACGATCAGTTC
ATGTCATCGTACTCCGAATCGGACACGGCGATGAATGGTGGATCGAGTTCGTGGTACATA
GGTTGTGTGTAGTAGAGTAGAACGAACTACTGCATCCTGATATCCGTAAGGGGAATGGGT
GTGAGCAAGTGATTGCAATCTCGTGAAGATGGAGAGAGAATGAGACCTTCCAAAAAAAAA
TCTTTTTTACTGTCCTTGAGTAGTTACCGGAAGGGAATATTGTACCGTGGTATCTCTGTT
GCGTTGAGGTATCGGAATGTATTGTAAATTTACAGTAAAAATCGTTGTAACTTTAGGTAT
CTTTTCAAGAATACTGGAGGCGAAAAAATGGCATGTGTGTAGCAATCACTTTGATGAGAT
GAATGAACTGGCAGAAACTGTGGATAAGGAAAAGAGGACAGTTGTTGCTTCAGAGGTTGG
CTCGGTGTCATTGTGGTCGATCCTGGCTTGCGTGTGTCTGATGGAACTCTGAAGATCTTG
CAGGCTCTGGGACTATGGCCGTATGCTTATCCTTTTTTAAGATAATACAAATATATGATA
TCCCCGGTTTCTATTATAAGATACACAGCCAACAAGTTCTTACTGAAATAAGTAAAAGTG
TGGTAGGATAAATTCCCAGCTACCATTAAGAAATTAAAAACAGCTTAAAAGGCTAAGAAT
GGCTGTATGCTTATCTGTTGATTCTGAACAATGTTCAGCTCCAGATTTCAGAATTCTCAC
TCTTCAGATTGAGATGGAACTGAGCTGTATAGGCTAGCCACTGTAAAATTAGGCTTTTAG
GCCCAAACTTCTGATGGGCCTCTGCTCACAGCCCAGTAATCCGTTGGTGAGCCCAAACTG
AGGATGACTGGGCCCCTCTTCTCCTCCTTTTCACACGTGTATATATGGGCCACCATCTTG
GTCCAATAACTGCTTCAACTGCTCCTAGAACCAAAGTACCAAACTAAATTCAGGTCAAAG
AAAGAAGAACCAAACTAAATTAAAGATCTTCTAGAAACAAATCTTGATCACCTTATTATG
CTAGATGTGGACGGATCAATCAAACCAGCAGAGGGAAAGCGACGTAAATCCGCTGTTTAA
TTATGAACTCGTGGCTGCCAAATTAAGACTTAAGAGGCACTGAAAAACCAGAGCTTCAGA
TGTGGGCGGTCCCTGATTTTGGTTAGGGAATTTGGTTCTTCCTTCTTTTCTTCAGTTCCT
ACTCCCTTTGGCCCCCAGCCAACAAAAATTCAAATGCATGCATCGAACCAAACAGATTAT
GATGCATCATTGCTTGCGTTCCGGTTTGTTTCTGAACACTGACGTCGTCCTGGTGCCTGC
GACGGCATCTGCATGCATCCTCCTCCGTTTTATTTTAAAATTACTTGCAAGATTATCTCA
AAATACAACTATTTATCTTCCAACTTTCTCATCTCAACAGATCATAATCATTTCTCATTT
CAACCTTAATCTTTTAAGAAAATGCATTACTCCTAAATGCTTAATCCATCTTAAAATATA
GTAACATAGTGCTTGATTAGATTGTAGTTCATATTCGTTGAACGTGGACAGAATCGCTAT
ATTGTGTACCATAGGATAAAGGAAGTAATTATATTTGAGACCGAACGAATAGTCCGATAT
GGATGACACATGCATGTCAGATTGTCAGCTATCTGCTCCCTTGCAGAGTCAGAAATGGAA
GACGGGGCCAGAATTCAGCTGCGACGAAGCAGCAGACAACGCTCGACATGGAGCCGTAGT
ACATGAGCGTGTATACAACGACTTGACAATTGTGTTGAAGAACCAACCACTCGACGAGTC
GACGGAGACTTAAATATTATAGTTTTGTGCTCTGGGTTTAAGCTCTGATCTGATCATTGA
GCATTATTTGTCTGATGCTAATTAAGGTCAAAACTACACTTGTCTATATCGATTAGCATA
TTTGGAGAGACACGTGTATATAGCTGGGGTCACTGTGGCACACAAGCCCTGATGTATCAT
ATCCATAAGTATAAGCAGATATTCACGCGACTAGCTACCTTAGTTAATTCCAGATGTCTG
ATGGTTACAGCGTATATAAACAGTTAAAACACACGTTGAACTTCCCCCAACTCTGCATGT
TTTCCTTGCCTCTCTTATGATCGATGATAGAGACATAGAGTATATAATCTAAGATCATAC
GATGATATG