Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0542900-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:21205700:21207611:1 gene:Os10g0542900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CHITINASE 8 description:Similar to chitinase. (Os10t0542900-01)
Sequence

ATGACGACGACGACGACGAGGTTTGTTCAGCTTGCCGCGTGCGCGGCGGCGTCGCTGCTC
GCCGTGGCGGCGAGTGGCGCGGCGGCGCAGGGCGTCGGGTCGGTCATCACGCAGGCGGTG
TTCAACAGCATGCTGCCCAACCGCGACAACTCGCAGTGCCCGGCGAGGGGCTTCTACACG
TACGACGCCTTCATCGCCGCCGCCAACTCCTTCCCGGCGTTCGGCACCTCCGGCGGCAGC
GCCGAGCTCATCCGGCGGGAGCTCGCCGCCTTCTTCGGCCAGACCTCCCACGAGACCACC
GGTGGAACGAGGGGTAGTTCTGACCAGTTCCAGTGGGGTTACTGCTTCAAAGAGGAGATA
AACAAGGCGACTTCTCCACCCTACTATGGACGTGGCCCAATTCAATTGACAGGGCAATCG
AACTACCAAGCAGCCGGGAACGCGCTGGGGCTGGACCTGGTGGGCAACCCAGACCTGGTG
TCCACCGACGCCGTGGTCTCCTTCAAGACGGCCATCTGGTTCTGGATGACGGCGCAGGGG
AACAAGCCGTCGTGCCACGACGTCATCCTCGGCCGGTGGACGCCGTCGGCGGCGGACACC
GCCGCCGGCCGCGTCCCCGGGTATGGCGTCATCACCAACATCATCAACGGCGGCATCGAG
TGCGGCGTCGGCCAGAACGACGCCAACGTCGACCGCATCGGCTACTACAAGCGCTACTGC
GACATGCTCGGCGCAGGCTACGGCAGCAACCTCGACTGCTACAACCAGCGCAACTTCGCC
AGCTAG

Peptide Sequence

PEP ID

Os10t0542900-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:21205700:21207611:1 gene:Os10g0542900 transcript:Os10t0542900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CHITINASE 8 description:Similar to chitinase. (Os10t0542900-01)
Sequence

MTTTTTRFVQLAACAAASLLAVAASGAAAQGVGSVITQAVFNSMLPNRDNSQCPARGFYT
YDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGGTRGSSDQFQWGYCFKEEI
NKATSPPYYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQG
NKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYC
DMLGAGYGSNLDCYNQRNFAS

Transcript Sequence

Transcript ID

Os10t0542900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:21205700:21207611:1 gene:Os10g0542900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CHITINASE 8 description:Similar to chitinase. (Os10t0542900-01)
Sequence

AAGCAACTGCAAGTGAAGCGGCGACATGACGACGACGACGACGAGGTTTGTTCAGCTTGC
CGCGTGCGCGGCGGCGTCGCTGCTCGCCGTGGCGGCGAGTGGCGCGGCGGCGCAGGGCGT
CGGGTCGGTCATCACGCAGGCGGTGTTCAACAGCATGCTGCCCAACCGCGACAACTCGCA
GTGCCCGGCGAGGGGCTTCTACACGTACGACGCCTTCATCGCCGCCGCCAACTCCTTCCC
GGCGTTCGGCACCTCCGGCGGCAGCGCCGAGCTCATCCGGCGGGAGCTCGCCGCCTTCTT
CGGCCAGACCTCCCACGAGACCACCGGTGGAACGAGGGGTAGTTCTGACCAGTTCCAGTG
GGGTTACTGCTTCAAAGAGGAGATAAACAAGGCGACTTCTCCACCCTACTATGGACGTGG
CCCAATTCAATTGACAGGGCAATCGAACTACCAAGCAGCCGGGAACGCGCTGGGGCTGGA
CCTGGTGGGCAACCCAGACCTGGTGTCCACCGACGCCGTGGTCTCCTTCAAGACGGCCAT
CTGGTTCTGGATGACGGCGCAGGGGAACAAGCCGTCGTGCCACGACGTCATCCTCGGCCG
GTGGACGCCGTCGGCGGCGGACACCGCCGCCGGCCGCGTCCCCGGGTATGGCGTCATCAC
CAACATCATCAACGGCGGCATCGAGTGCGGCGTCGGCCAGAACGACGCCAACGTCGACCG
CATCGGCTACTACAAGCGCTACTGCGACATGCTCGGCGCAGGCTACGGCAGCAACCTCGA
CTGCTACAACCAGCGCAACTTCGCCAGCTAGCTAGCTGAGTGATCGATCGATCCATCGGA
TTGTTATCCTATTGCATGATCGTTCGATCAGTTAGTACTACCAATAAAAACTGGCATGTA
GTGATGTAGTATCCCAACATGAATAAAGGTCTTTAATCAAATAAAGGCAAATATCAATTG
CTTTAACTGCTACAGGCACGACGATACTGATCTCACCCCAAAAATTTACACCATGTCACA
TGGAACGTTTGAACACATGCATGAAGTATTAAATATATACTACAAAATAACT