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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0542400-02
CDS Infomation

cds chromosome:IRGSP-1.0:10:21179719:21181277:1 gene:Os10g0542400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EXLA2 description:Expansin/Lol pI family protein. (Os10t0542400-01);Expansin/Lol pI family protein. (Os10t0542400-02)
Sequence

ATGGCCGTTCGGTGTTGCTCTTCCATGGCGAGCGCCAGCGTTGTCCTCTTCTTCGTCGTC
GTCGGCATGTCGGCGTCGATGGTCTCCGGCTGCGACAGGTGCGTGCGCCGGTCCAAGGCC
GGATTCCGCGACTCGTCGATCGCGCTGAACGCCGGTTCTTGCGGGTACGGCTCCCTCGCC
GCGTCCTTCAACGGCGGCCACCTCGCCGCCGCGAGCCCGGCGCTGTTCAGGGGCGGTGTC
GGCTGCGGCGCCTGCTTCCAGGTGCGGTGCAAGGACGGCAAGCTGTGCAGCACGGCGGGC
GCCAAGGTGGTCGTGACGGACGAGGCGCGGTCGACGAACCGCACCGACCTCGTGCTGAGC
GCCGCCGCGTACGCCGCCATGGCCCGCCCCGGCATGGCCGCGCAGCTCAGAACACGCCGC
GCCGTTGACGTCGAGTACAAGAGGGTACCGTGCGAGTACGCAGCTGGTCGCAACCTGTCG
ATACGCGTGGAGGAGAAGAGCCGTCCGCCGCGCGAGCTGTCCATCAGGTTCCTCTACCAG
GGTGGCCAAACCGACATCGTCGCCGTCGACGTCGCCACGGTCGGGTCGTCGAACTGGAAG
TTCATGACGCGGGACTACGGGCCGGCGTGGAGCACGGCGCAGGCGCCGGCGGGGCCGCTG
CAGTTCAGGGTGGTGGTCACCGGCGGGTACGACGGGAAGTGGGTGTGGGCCGACGGCGAG
GTCCTGCCGCGGCGGTGGACGGCCGGACGGGTGTACGACGCCGGCGTGCAGATCGCCGAC
GTCGCGCAGGAAGGGTGCTACCCGTGCGACACGCAGGAGTGGAAGTGA

Peptide Sequence

PEP ID

Os10t0542400-02
PEP Infomation

pep chromosome:IRGSP-1.0:10:21179719:21181277:1 gene:Os10g0542400 transcript:Os10t0542400-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EXLA2 description:Expansin/Lol pI family protein. (Os10t0542400-01);Expansin/Lol pI family protein. (Os10t0542400-02)
Sequence

MAVRCCSSMASASVVLFFVVVGMSASMVSGCDRCVRRSKAGFRDSSIALNAGSCGYGSLA
ASFNGGHLAAASPALFRGGVGCGACFQVRCKDGKLCSTAGAKVVVTDEARSTNRTDLVLS
AAAYAAMARPGMAAQLRTRRAVDVEYKRVPCEYAAGRNLSIRVEEKSRPPRELSIRFLYQ
GGQTDIVAVDVATVGSSNWKFMTRDYGPAWSTAQAPAGPLQFRVVVTGGYDGKWVWADGE
VLPRRWTAGRVYDAGVQIADVAQEGCYPCDTQEWK

Transcript Sequence

Transcript ID

Os10t0542400-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:21179719:21181277:1 gene:Os10g0542400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EXLA2 description:Expansin/Lol pI family protein. (Os10t0542400-01);Expansin/Lol pI family protein. (Os10t0542400-02)
Sequence

CCCTCGACTTGTTCTCCCAAGTAAACCACTTCAGTTTCAGAGTTTTCGAGCGAGCACGTT
TTCGTAGCTTCCGTCGATCGAATTCATGGCCGTTCGGTGTTGCTCTTCCATGGCGAGCGC
CAGCGTTGTCCTCTTCTTCGTCGTCGTCGGCATGTCGGCGTCGATGGTCTCCGGCTGCGA
CAGGTGCGTGCGCCGGTCCAAGGCCGGATTCCGCGACTCGTCGATCGCGCTGAACGCCGG
TTCTTGCGGGTACGGCTCCCTCGCCGCGTCCTTCAACGGCGGCCACCTCGCCGCCGCGAG
CCCGGCGCTGTTCAGGGGCGGTGTCGGCTGCGGCGCCTGCTTCCAGGTGCGGTGCAAGGA
CGGCAAGCTGTGCAGCACGGCGGGCGCCAAGGTGGTCGTGACGGACGAGGCGCGGTCGAC
GAACCGCACCGACCTCGTGCTGAGCGCCGCCGCGTACGCCGCCATGGCCCGCCCCGGCAT
GGCCGCGCAGCTCAGAACACGCCGCGCCGTTGACGTCGAGTACAAGAGGGTACCGTGCGA
GTACGCAGCTGGTCGCAACCTGTCGATACGCGTGGAGGAGAAGAGCCGTCCGCCGCGCGA
GCTGTCCATCAGGTTCCTCTACCAGGGTGGCCAAACCGACATCGTCGCCGTCGACGTCGC
CACGGTCGGGTCGTCGAACTGGAAGTTCATGACGCGGGACTACGGGCCGGCGTGGAGCAC
GGCGCAGGCGCCGGCGGGGCCGCTGCAGTTCAGGGTGGTGGTCACCGGCGGGTACGACGG
GAAGTGGGTGTGGGCCGACGGCGAGGTCCTGCCGCGGCGGTGGACGGCCGGACGGGTGTA
CGACGCCGGCGTGCAGATCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGCGACACGCA
GGAGTGGAAGTGACACACACCGCATTAACATGTACAGTTTTTTTGCTTTCCTTTCTTTTT
TCTCTCCCCTTTTTGGGACGCATTGAGCAGCTAGCCATCCATCGAATTAAGAGCCACAGC
CC