Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0542200-03
CDS Infomation

cds chromosome:IRGSP-1.0:10:21169711:21172191:-1 gene:Os10g0542200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquilin domain containing protein. (Os10t0542200-01);Hypothetical conserved gene. (Os10t0542200-03)
Sequence

AACACAGACAGAGCAATGAGCAACATTGAGTCTTCTCCTGAAGGGTTTAATATGCTCCGA
CGCATGTATGAAACTGTCCAGGAGCCTTTCCTAAATGCGACAACAATGGGTGGAGAAGGC
AACACAGCTCCAAACCCATTCTCAGCTCTTCTTGGAAATCAGGGTTCTAACCAACCAAGG
GATCCTGCTACAAATGCTCCAAATACTGGCTCAGAGTCTACAACAGGAACCCCTGCTCCA
AACACTAATCCACTTCCAAATCCTTGGAGCTCCAATGCTGGAGGTGCGCAAGGAGCAACA
CGGGCAGGTTCTACTGGCAATGCAAGAACCGGTGCCACTGGGGGCCTTGGAGGGTTGGGG
TCAGCTGATCTGAGCAGTTTATTTGGTGGTCTTGCCGGTAATACAGGAACTGGTGCTACT
GGTGGTCTAGGAGGGTTGGGTTCAGCAGATTTGGGAAGTTTGCTTGGTGGTTCTCCTGAT
TCTTCTTCCTTGAGCCAGATTTTGCAAAACCCTGTTATGATGCAGATGATGCAGAATATC
ATGTCTGATCCACAGTCCATGAACCAGTTGCTTAACTTCAACCCAAATACACGCAACCTC
ATGGAATCAAACACTCAGTTGAGGGAAATGTTCCAAAATCCAGAATTTATTCGCCAGCTT
ACATCCCCAGAAACTATGCAGCAATTACTCTCGTTCCAGCAGACATTATTATCACAGCTT
GGTCAAAATCAACCTAGGCAGGATGGTAGCCAAGGAGGCAATGCGACAGGCATGCGGGGA
AATGTTAGCCTCGACACCTTGATGGGCATGCTTAGTGGGCTTGGTGCTGGAGGTGGCATA
GGTGTACCCAATACATCCAATGTTCCACCGGAAGAACTGTATGCAACACAGCTCACTCAG
CTCCGAGAGATGGGTTTCATCGACACTGCAGAGAACATCCAGGCGCTAGTCGCAACTGCT
GGGAATGTGAATGCTGCGGTGGAGCGTCTTCTTGGCAATCTTGGCCAGTAG

Peptide Sequence

PEP ID

Os10t0542200-03
PEP Infomation

pep chromosome:IRGSP-1.0:10:21169711:21172191:-1 gene:Os10g0542200 transcript:Os10t0542200-03 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquilin domain containing protein. (Os10t0542200-01);Hypothetical conserved gene. (Os10t0542200-03)
Sequence

NTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMGGEGNTAPNPFSALLGNQGSNQPR
DPATNAPNTGSESTTGTPAPNTNPLPNPWSSNAGGAQGATRAGSTGNARTGATGGLGGLG
SADLSSLFGGLAGNTGTGATGGLGGLGSADLGSLLGGSPDSSSLSQILQNPVMMQMMQNI
MSDPQSMNQLLNFNPNTRNLMESNTQLREMFQNPEFIRQLTSPETMQQLLSFQQTLLSQL
GQNQPRQDGSQGGNATGMRGNVSLDTLMGMLSGLGAGGGIGVPNTSNVPPEELYATQLTQ
LREMGFIDTAENIQALVATAGNVNAAVERLLGNLGQ

Transcript Sequence

Transcript ID

Os10t0542200-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:21169711:21172191:-1 gene:Os10g0542200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquilin domain containing protein. (Os10t0542200-01);Hypothetical conserved gene. (Os10t0542200-03)
Sequence

AACACAGACAGAGCAATGAGCAACATTGAGTCTTCTCCTGAAGGGTTTAATATGCTCCGA
CGCATGTATGAAACTGTCCAGGAGCCTTTCCTAAATGCGACAACAATGGGTGGAGAAGGC
AACACAGCTCCAAACCCATTCTCAGCTCTTCTTGGAAATCAGGGTTCTAACCAACCAAGG
GATCCTGCTACAAATGCTCCAAATACTGGCTCAGAGTCTACAACAGGAACCCCTGCTCCA
AACACTAATCCACTTCCAAATCCTTGGAGCTCCAATGCTGGAGGTGCGCAAGGAGCAACA
CGGGCAGGTTCTACTGGCAATGCAAGAACCGGTGCCACTGGGGGCCTTGGAGGGTTGGGG
TCAGCTGATCTGAGCAGTTTATTTGGTGGTCTTGCCGGTAATACAGGAACTGGTGCTACT
GGTGGTCTAGGAGGGTTGGGTTCAGCAGATTTGGGAAGTTTGCTTGGTGGTTCTCCTGAT
TCTTCTTCCTTGAGCCAGATTTTGCAAAACCCTGTTATGATGCAGATGATGCAGAATATC
ATGTCTGATCCACAGTCCATGAACCAGTTGCTTAACTTCAACCCAAATACACGCAACCTC
ATGGAATCAAACACTCAGTTGAGGGAAATGTTCCAAAATCCAGAATTTATTCGCCAGCTT
ACATCCCCAGAAACTATGCAGCAATTACTCTCGTTCCAGCAGACATTATTATCACAGCTT
GGTCAAAATCAACCTAGGCAGGATGGTAGCCAAGGAGGCAATGCGACAGGCATGCGGGGA
AATGTTAGCCTCGACACCTTGATGGGCATGCTTAGTGGGCTTGGTGCTGGAGGTGGCATA
GGTGTACCCAATACATCCAATGTTCCACCGGAAGAACTGTATGCAACACAGCTCACTCAG
CTCCGAGAGATGGGTTTCATCGACACTGCAGAGAACATCCAGGCGCTAGTCGCAACTGCT
GGGAATGTGAATGCTGCGGTGGAGCGTCTTCTTGGCAATCTTGGCCAGTAGCTAAAGCGT
ACCAGACGCTGCCCATAACGTCACCAACTCCGCTCTTTTGCAAGAGGTTTTTTAGCCCCT
CCAAGTTCAAACGCAGCGTCTGTCTACAGTCTCAGGAGAAAATAAAACAAAGAAATCCCA
CCCCCACCATTAACTTTTCCATACATGGTCGTCATGCCTTTGTTTTTACCGTGTTGTATT
TGACTATTTGGGTTGATGTACATACATATGAAATTATCGGATCTTACCGCATAGAATATG
GGTCTACCTTTGC