Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os10t0540100-01
CDS Infomation	cds chromosome:IRGSP-1.0:10:21058117:21061300:-1 gene:Os10g0540100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os10t0540100-01)
Sequence	ATGCATCTCCCCGTCTTCCTCGACGACCCGCGCCGCCTCCTCTCCTCCTCCGCCGCCGCC TCCGCCTCCGCCCGGACCCTCGCCCGCCTCCACGCCCTCCTCATCGTCTCCTCCTCCGCC TCCCACACCCTCATCTCCTCGCTCGCCGCCGCCTACGCCCGCGCTGGCGACCTCGCCGCC GCGGAGTCCACCCTCACCGCAACCGCCGCCTCATCCTCCATCGCCGCGTGGAACGCCATC ATCGCCGCGCACTCCCGCCGCGGCTCCCCGGCATCCGCGCTCCGCGTCTTCCGCGCGCTC CCGCCCGCCGCGCGCCCCGACAGCACCACCTTCACGCTCGCGCTCTCCGCGTGCGCGCGC CTCGGGGACCTTCGCGGCGGGGAGTCCGTCAGGGACCGCGCGTTCGACGCCGGGTACAAG GACGACGTCTTCGTCTGCTCGTCGCTGCTCCACCTCTACGCGAGATGGGGCGCCATGGGC GACGCGGTCAAGGTGTTCGTCCGAATGCCGAGGAGGGACCGCGTCACCTGGAGCACCATG GTTGCTGGTTTCGTGAGTGCTGGACAGCCACTGGATGCGATTCAGATGTACAGGAGGATG AGGGAGGATGGTGTGAAGGGAGATGAGGTGGTCATGATTGGGGTTATACAAGCGTGCACA GCAGCCAGAAATGTCCGAATGGGAGCTTCAGTTCATGGGCATCTCTTACGGCATGGAATG AGGATGGATGTTGTTACTGCAACAAGCCTCGTGGATATGTATGCAAAGAATGGACTACTT GATGTGGCGTGCCGAGTTTTTGGTCTGATGGTGCACCGGAATGATGTCTCATGGAGCGCG ATGATCTCAGGTTTTGCACAGAATGGGCAATCGGATGAGGCACTTCGGTTGTTCAGAAAT ATGCAGGCTTCTGGTATTCAGCCTGACTCAGGAGCACTTGTTAGTGCTCTGCTAGCTTGC TCAAATATTGGATTCTTGAAGCTAGGGAGGTCAGTACATGGTTTCATCGTGAGGAGGTTT GATTTTAATTGTATCCTCGGTACAGCAGCCATTGATATGTACTCAAAATGCGGCTCCCTA GCAAGTGCACAGATGCTTTTCAACATGATCAGTGATAGAGACTTGATCTTGTGGAATGCC ATGATTGCGTGTTGTGGTGCTCATGGACGAGGCCAGGATGCGCTCACTTTGTTCCAAGAA ATGAACGAAACTGGAATGAGACCAGATCATGCCACATTTGCTTCTCTTTTGTCTGCTCTA AGCCATTCTGGTCTTGTGGAGGAAGGGAAACTATGGTTTGGTCGCATGGTTAATCACTTC AAGATCACACCTGCTGAGAAACACTATGTCTGTCTAGTTGATCTTTTAGCACGTTCCGGT CTTGTGGAAGAAGCCAGTGACCTGCTCACATCAATGAAAGCTGAGCCAACCGTTGCCATT TGGGTTGCTCTACTTTCAGGCTGTCTGAATAACAAGAAGCTGGAGCTTGGAGAAAGTATA GCAGACAATATCCTTGAATTGCAACCTGACGATGTTGGCGTTCTTGCGTTGGTCTCAAAT CTCTATGCTGCTACAAAGAAATGGGACAAAGTCAGACAAGTTAGAAAGCTAATGAAAGAT TCTGGAAGCAAGAAGATGCCTGGCTGTAGCTCAATAGAGATACGCGGAACACGCCACGTG TTCGTGATGGAAGACCAGAGCCATCCTCAGCGTGAAGAGATCGTAAGTAAGGTGGCAAAG CTTGATTTAGAGATGAGGAAGATGGGCTACATTCCGAGAACAGAGTTTGTGTACCACGAT CTGGAGGAGGAAGTGAAGGAACAGCAGCTCAGCTACCACAGCGAGAGGCTGGCCATCGCC TTCGGTTTGCTGAACACAGGCCCAGGAACAAGGCTTGTGATCATAAAGAACCTCAGGGTC TGTGGTGATTGCCATGATGCCATCAAGTACATCTCGAAGATCGCGGACCGGGAGATCGTA GTGCGAGACGCCAAACGCTTCCACCATTTCAAAGACGGAGTCTGCTCCTGCAGAGATTAC TGGTGA

Peptide Sequence

PEP ID	Os10t0540100-01
PEP Infomation	pep chromosome:IRGSP-1.0:10:21058117:21061300:-1 gene:Os10g0540100 transcript:Os10t0540100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os10t0540100-01)
Sequence	MHLPVFLDDPRRLLSSSAAASASARTLARLHALLIVSSSASHTLISSLAAAYARAGDLAA AESTLTATAASSSIAAWNAIIAAHSRRGSPASALRVFRALPPAARPDSTTFTLALSACAR LGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTM VAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGM RMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRN MQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCILGTAAIDMYSKCGSL ASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSAL SHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAI WVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKD SGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHD LEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIV VRDAKRFHHFKDGVCSCRDYW

Transcript Sequence

Transcript ID	Os10t0540100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:10:21058117:21061300:-1 gene:Os10g0540100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os10t0540100-01)
Sequence	GTCGTTCCGGCGCTAAGCACATGCATCTCCCCGTCTTCCTCGACGACCCGCGCCGCCTCC TCTCCTCCTCCGCCGCCGCCTCCGCCTCCGCCCGGACCCTCGCCCGCCTCCACGCCCTCC TCATCGTCTCCTCCTCCGCCTCCCACACCCTCATCTCCTCGCTCGCCGCCGCCTACGCCC GCGCTGGCGACCTCGCCGCCGCGGAGTCCACCCTCACCGCAACCGCCGCCTCATCCTCCA TCGCCGCGTGGAACGCCATCATCGCCGCGCACTCCCGCCGCGGCTCCCCGGCATCCGCGC TCCGCGTCTTCCGCGCGCTCCCGCCCGCCGCGCGCCCCGACAGCACCACCTTCACGCTCG CGCTCTCCGCGTGCGCGCGCCTCGGGGACCTTCGCGGCGGGGAGTCCGTCAGGGACCGCG CGTTCGACGCCGGGTACAAGGACGACGTCTTCGTCTGCTCGTCGCTGCTCCACCTCTACG CGAGATGGGGCGCCATGGGCGACGCGGTCAAGGTGTTCGTCCGAATGCCGAGGAGGGACC GCGTCACCTGGAGCACCATGGTTGCTGGTTTCGTGAGTGCTGGACAGCCACTGGATGCGA TTCAGATGTACAGGAGGATGAGGGAGGATGGTGTGAAGGGAGATGAGGTGGTCATGATTG GGGTTATACAAGCGTGCACAGCAGCCAGAAATGTCCGAATGGGAGCTTCAGTTCATGGGC ATCTCTTACGGCATGGAATGAGGATGGATGTTGTTACTGCAACAAGCCTCGTGGATATGT ATGCAAAGAATGGACTACTTGATGTGGCGTGCCGAGTTTTTGGTCTGATGGTGCACCGGA ATGATGTCTCATGGAGCGCGATGATCTCAGGTTTTGCACAGAATGGGCAATCGGATGAGG CACTTCGGTTGTTCAGAAATATGCAGGCTTCTGGTATTCAGCCTGACTCAGGAGCACTTG TTAGTGCTCTGCTAGCTTGCTCAAATATTGGATTCTTGAAGCTAGGGAGGTCAGTACATG GTTTCATCGTGAGGAGGTTTGATTTTAATTGTATCCTCGGTACAGCAGCCATTGATATGT ACTCAAAATGCGGCTCCCTAGCAAGTGCACAGATGCTTTTCAACATGATCAGTGATAGAG ACTTGATCTTGTGGAATGCCATGATTGCGTGTTGTGGTGCTCATGGACGAGGCCAGGATG CGCTCACTTTGTTCCAAGAAATGAACGAAACTGGAATGAGACCAGATCATGCCACATTTG CTTCTCTTTTGTCTGCTCTAAGCCATTCTGGTCTTGTGGAGGAAGGGAAACTATGGTTTG GTCGCATGGTTAATCACTTCAAGATCACACCTGCTGAGAAACACTATGTCTGTCTAGTTG ATCTTTTAGCACGTTCCGGTCTTGTGGAAGAAGCCAGTGACCTGCTCACATCAATGAAAG CTGAGCCAACCGTTGCCATTTGGGTTGCTCTACTTTCAGGCTGTCTGAATAACAAGAAGC TGGAGCTTGGAGAAAGTATAGCAGACAATATCCTTGAATTGCAACCTGACGATGTTGGCG TTCTTGCGTTGGTCTCAAATCTCTATGCTGCTACAAAGAAATGGGACAAAGTCAGACAAG TTAGAAAGCTAATGAAAGATTCTGGAAGCAAGAAGATGCCTGGCTGTAGCTCAATAGAGA TACGCGGAACACGCCACGTGTTCGTGATGGAAGACCAGAGCCATCCTCAGCGTGAAGAGA TCGTAAGTAAGGTGGCAAAGCTTGATTTAGAGATGAGGAAGATGGGCTACATTCCGAGAA CAGAGTTTGTGTACCACGATCTGGAGGAGGAAGTGAAGGAACAGCAGCTCAGCTACCACA GCGAGAGGCTGGCCATCGCCTTCGGTTTGCTGAACACAGGCCCAGGAACAAGGCTTGTGA TCATAAAGAACCTCAGGGTCTGTGGTGATTGCCATGATGCCATCAAGTACATCTCGAAGA TCGCGGACCGGGAGATCGTAGTGCGAGACGCCAAACGCTTCCACCATTTCAAAGACGGAG TCTGCTCCTGCAGAGATTACTGGTGATGAAGGCTACCGAGAACCAGCATGGCAAGAGGAT GCGTGTTGCTGTATGTATACCCAACTGATCCCCCTAGGCGGGGACCATCAGAAGAAGTTC AGCCACGCAAGGCGGCCACGTCCGTCCGTCCGTCACGGGGGACCCGGCGGCGTGGTAGTG GTGCGGTGCCCGTCGCCTTCGCCATTCCCGGCCGCGGGCGTCATCTGTCGCGGCGAAAAC GACCCGGGAGGTGGCGGCAAAGGCTTTTGCTTCCTACCCGCTGGGGCGCGCGCGTCGCCG TGATCGGTACGAATCTCGCGGGGGGAAGTGGTGGTGGCCCAGACAGATCGTGATAACGTT GGACTTTGCGCGCAGGTCGCGTTGGTTGGAGTGGTTTGCGGTCTAGGACACTTGCTTTTT TCCCCAGTAGGATGATCACCCAAGACCGCTGCACTGCACCTGCCCCATGTGGGAGCAGCA TCCAGCATGGCCAGTTCGCAACGCTACACCGGGAGGAAGCAAAAAGGTTTCTTCGCCGTT GACTTATTACGGGTGTGGCCAGAAGAAATTCGGCGTTTGGTTTGCTGTGCATATGTGTGA GCCATGGTAGTTACATGCTGTTTCTGTTTCCACTGGTATAGTGGTATTGCCCGTTTCGGT CCCAGGTGAGTCTGAACTCTGAAGACCATTTTATCTTTCACAAGATTCTGTAATAATCTG GTTGGTGGATGAAGGCAGTGTTTTCATAAAAGATTCATTAATTTCGTGGTGGGATTTAGT GTGTCCAGTGTAATCATACAGGGTTCATCTCACTGTCTGCCAACCTTTGTGTTCTAATTT GAAAAGAAACGAATTGATATTAGGTTTTTTTTTTCCTTAACAAAAAAGTACCGAATTGGT TGTCC