Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os10t0539700-01
CDS Infomation	cds chromosome:IRGSP-1.0:10:21036241:21039023:1 gene:Os10g0539700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os10t0539700-01)
Sequence	ATGGCGGGCTCCGGTGGCGAGGCGATGGCGAGCTCTGGGCTTGACCTGGGCGAGTACCTC GATCGGCCGGACGCTATCCACCGGCGAGCGGCGTCGGTCGCCATCGTGAGGTCCGGTGGT GGCGATGGGCCGAGGATTGTGGATGGAGGGAGGGATGATCGGAGGGCGCGGTCGTCGCGC CGGCTCTCGCTGTCGTCGTGGAGGAGGCCGGCCGGCGGCGAGACGTCGGTGGAGTCGAGG AGGTATGGTTTTACGGCGGCGGCGGCGGCCGAGGTTGGGGGGAAGACGAGGGCGGCGGCG ATATGGGAGTGGAAGCCGGTGCGCGTGCTCTCTCGCATCGGGAAGCGCCGGTGCGGGTGC CTCCTGTCCGTCGAGGTGGCCGGCGTCCGCGGCGTTCCGGCCTCCATGGACGGCCTCCGC CTCGCCGTCACGGTGCGCAAGGCGGAGACGAAGGACGGCGCGGTGCAGACGATGCCGGCG ACGGTGCGCGGCGGCTGCGCCGACTTCGTCGAGACGCTCTTCGTCAGGTGCAACATCTAC TTCGCCGGCGGCGCCGGCACCGGGAAGCCGCTGAAGCTCGAGCCGCGGCGGTTCGTCGTG TCCGTCGTCCCCGCCGAGGCGCCCGGCGTCCGTCTCGGGGCGCATGCCGTCGACGTCAGC TCCCTCGTGCTCGACTCCCTCCAGAAGAGCTCCGAGGGCCGCCGTGTCCGGTGGTTCGAC ACGGCCGTCACCCTCTCCGGCAAGGCCACCGGCGGCGAGCTGCTGCTCAAGCTGGGGTTC CAGCTCATGGACGACGCCGGCCTCTGCCTCTACACCCAGGCGGCAACGGAGAAGGTCGAC GTCGTCGACGACGTGTCGCCGGCTCTTGCCAGAGCTCACAACAAGAACTCGTTCAGCGTC GCGAGGACGTCGGGGCCCAAGCTTTCAGCATCCGACGCGGCCATCTCGCCCTCCATGAGA GCCTACAAGCAGCTCATCGATAGGCTCAGCGTCGACGAGCATGGAGATCCTGTGACGTCG CTGATCCCTCGGAAGCTCGCCGACGACGAACTTTCCGGCGACGTCGGCCTCCCGGAGTAC GAGGTGGTTGACAAGGGCGTCGAGACCGTCAAAGAGGTCGTCCACTACCATGCTCACCGC GACGTGCTCAAAGAGCTCGACTCCATTGCCGAGCAGATCGAGGCCATCGAGGCGCTGATG ACGAACGGCGGCAAGAAGTCGCCGCCGTCGCCGAAGAAGGTGGATCAGAAGCAGTGCCTC GACGCGGATGAGGAGATGGTGACGGTGGAGTTTCTACGGAAGCTCGAGGTAGTCGACGAT AAGGGCAGGAAGCTGAAGCAGCCCATGACGCCGAGAAGCGAGTCGGAGAAGAAGGCGGCG GCGGCGGCGCCGCCGGTGGTGCCGGACTTGGGGCCGGGCCTTGGGACGGCGGTGCAAACG CGCGACGGCGGATTCTTGGTGTCCATGAACCCGTTCGACTTGCCTCTTGAGAAAGGAGAT GCACCCCCGAAGCTCGCCATGCAGGTGTCGAGGCCGTTCGTGCTGCCGAGCTCCATGGCC GCGACTGGGTTCGACGTCCTCCAGAAGATGGCGGCGGCGGGCGGCGCCGACGAGGTCCGG GACAAGGTGGCGAGGCTCGGCGGCATGGACAACCTCACGGGGAAGACGCCCGAGCAGGTG GGCTTCGAGGGCATCGCGGAGGCGGTCATCGGCGGGCGGCGCACCGAGGGCGCGAGCTCG AGCGCCGCCCGGTCCGTCCGGCTCGTCCGGAAGCTCGCCGCCGCCGTGTCCGATGGCCGG AGCGAGCGCGTCGCCACCGGCATCTGGACCGCGGCGGACGACCCGGAGACGCTGGAGGAG GTGATCGCCTTCTCCCTGCAGAAGCTGGAGGCCATGGCCGTGGACGCGCTCATGATCCAG GCCGAGATGGCCGACGAGGACGCGCCGTTCGAGGTGGCGCCGGCCGCGGGCGACGCCACC ACCGTGTTCGACGCGCTGGTGTCGCCCGACGAGTGGTCGGAGTCACGCGGCTCCGACGGC CGCGTCACGGTGGTGGCGGCCATCCAGCTGCGCGACCCGTCGCGGCGCTACGAGGCGGTG GGCGCGCCGATGGTGGCCGTCGTGCAGTCGGCGAGGCTGCTCGGCGCGGCGGGGAACAGC GGCGGGAGGTTCAAGGTGAGGAGCCTGCACGTCGGCGGCGTGCAGCTGCGGTGCCCGGTG GGAGGCGGCGCCGGCGGCGGCCGCGCGAGCTGGGGCGCGGAGAGGCAGAAGCTGACGGCA ATGCAGTGGGCGCTCGCGCACGGGCCGGCGCGCGCCGCGGGCAGGAGAGCGCGGACGCCG ACGACGACGACGACGCCGTCGTCTCAGGCGAGGCAGCGGCCGGACGTCGTGTGGAGCTTG TCGTCGCGGGTGCTCGCCGGGATGTGGCTCAAGACGGTGCGCAACCCGGATGTCAGAGTT GGCGCCACCGCCGCCGGCAGCGGCGGCGGCGGCAACTGA

Peptide Sequence

PEP ID	Os10t0539700-01
PEP Infomation	pep chromosome:IRGSP-1.0:10:21036241:21039023:1 gene:Os10g0539700 transcript:Os10t0539700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os10t0539700-01)
Sequence	MAGSGGEAMASSGLDLGEYLDRPDAIHRRAASVAIVRSGGGDGPRIVDGGRDDRRARSSR RLSLSSWRRPAGGETSVESRRYGFTAAAAAEVGGKTRAAAIWEWKPVRVLSRIGKRRCGC LLSVEVAGVRGVPASMDGLRLAVTVRKAETKDGAVQTMPATVRGGCADFVETLFVRCNIY FAGGAGTGKPLKLEPRRFVVSVVPAEAPGVRLGAHAVDVSSLVLDSLQKSSEGRRVRWFD TAVTLSGKATGGELLLKLGFQLMDDAGLCLYTQAATEKVDVVDDVSPALARAHNKNSFSV ARTSGPKLSASDAAISPSMRAYKQLIDRLSVDEHGDPVTSLIPRKLADDELSGDVGLPEY EVVDKGVETVKEVVHYHAHRDVLKELDSIAEQIEAIEALMTNGGKKSPPSPKKVDQKQCL DADEEMVTVEFLRKLEVVDDKGRKLKQPMTPRSESEKKAAAAAPPVVPDLGPGLGTAVQT RDGGFLVSMNPFDLPLEKGDAPPKLAMQVSRPFVLPSSMAATGFDVLQKMAAAGGADEVR DKVARLGGMDNLTGKTPEQVGFEGIAEAVIGGRRTEGASSSAARSVRLVRKLAAAVSDGR SERVATGIWTAADDPETLEEVIAFSLQKLEAMAVDALMIQAEMADEDAPFEVAPAAGDAT TVFDALVSPDEWSESRGSDGRVTVVAAIQLRDPSRRYEAVGAPMVAVVQSARLLGAAGNS GGRFKVRSLHVGGVQLRCPVGGGAGGGRASWGAERQKLTAMQWALAHGPARAAGRRARTP TTTTTPSSQARQRPDVVWSLSSRVLAGMWLKTVRNPDVRVGATAAGSGGGGN

Transcript Sequence

Transcript ID	Os10t0539700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:10:21036241:21039023:1 gene:Os10g0539700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os10t0539700-01)
Sequence	ACAGTGCGCGCGCTCCGCGTCGTGACACGGACGGACATGGCGGGCTCCGGTGGCGAGGCG ATGGCGAGCTCTGGGCTTGACCTGGGCGAGTACCTCGATCGGCCGGACGCTATCCACCGG CGAGCGGCGTCGGTCGCCATCGTGAGGTCCGGTGGTGGCGATGGGCCGAGGATTGTGGAT GGAGGGAGGGATGATCGGAGGGCGCGGTCGTCGCGCCGGCTCTCGCTGTCGTCGTGGAGG AGGCCGGCCGGCGGCGAGACGTCGGTGGAGTCGAGGAGGTATGGTTTTACGGCGGCGGCG GCGGCCGAGGTTGGGGGGAAGACGAGGGCGGCGGCGATATGGGAGTGGAAGCCGGTGCGC GTGCTCTCTCGCATCGGGAAGCGCCGGTGCGGGTGCCTCCTGTCCGTCGAGGTGGCCGGC GTCCGCGGCGTTCCGGCCTCCATGGACGGCCTCCGCCTCGCCGTCACGGTGCGCAAGGCG GAGACGAAGGACGGCGCGGTGCAGACGATGCCGGCGACGGTGCGCGGCGGCTGCGCCGAC TTCGTCGAGACGCTCTTCGTCAGGTGCAACATCTACTTCGCCGGCGGCGCCGGCACCGGG AAGCCGCTGAAGCTCGAGCCGCGGCGGTTCGTCGTGTCCGTCGTCCCCGCCGAGGCGCCC GGCGTCCGTCTCGGGGCGCATGCCGTCGACGTCAGCTCCCTCGTGCTCGACTCCCTCCAG AAGAGCTCCGAGGGCCGCCGTGTCCGGTGGTTCGACACGGCCGTCACCCTCTCCGGCAAG GCCACCGGCGGCGAGCTGCTGCTCAAGCTGGGGTTCCAGCTCATGGACGACGCCGGCCTC TGCCTCTACACCCAGGCGGCAACGGAGAAGGTCGACGTCGTCGACGACGTGTCGCCGGCT CTTGCCAGAGCTCACAACAAGAACTCGTTCAGCGTCGCGAGGACGTCGGGGCCCAAGCTT TCAGCATCCGACGCGGCCATCTCGCCCTCCATGAGAGCCTACAAGCAGCTCATCGATAGG CTCAGCGTCGACGAGCATGGAGATCCTGTGACGTCGCTGATCCCTCGGAAGCTCGCCGAC GACGAACTTTCCGGCGACGTCGGCCTCCCGGAGTACGAGGTGGTTGACAAGGGCGTCGAG ACCGTCAAAGAGGTCGTCCACTACCATGCTCACCGCGACGTGCTCAAAGAGCTCGACTCC ATTGCCGAGCAGATCGAGGCCATCGAGGCGCTGATGACGAACGGCGGCAAGAAGTCGCCG CCGTCGCCGAAGAAGGTGGATCAGAAGCAGTGCCTCGACGCGGATGAGGAGATGGTGACG GTGGAGTTTCTACGGAAGCTCGAGGTAGTCGACGATAAGGGCAGGAAGCTGAAGCAGCCC ATGACGCCGAGAAGCGAGTCGGAGAAGAAGGCGGCGGCGGCGGCGCCGCCGGTGGTGCCG GACTTGGGGCCGGGCCTTGGGACGGCGGTGCAAACGCGCGACGGCGGATTCTTGGTGTCC ATGAACCCGTTCGACTTGCCTCTTGAGAAAGGAGATGCACCCCCGAAGCTCGCCATGCAG GTGTCGAGGCCGTTCGTGCTGCCGAGCTCCATGGCCGCGACTGGGTTCGACGTCCTCCAG AAGATGGCGGCGGCGGGCGGCGCCGACGAGGTCCGGGACAAGGTGGCGAGGCTCGGCGGC ATGGACAACCTCACGGGGAAGACGCCCGAGCAGGTGGGCTTCGAGGGCATCGCGGAGGCG GTCATCGGCGGGCGGCGCACCGAGGGCGCGAGCTCGAGCGCCGCCCGGTCCGTCCGGCTC GTCCGGAAGCTCGCCGCCGCCGTGTCCGATGGCCGGAGCGAGCGCGTCGCCACCGGCATC TGGACCGCGGCGGACGACCCGGAGACGCTGGAGGAGGTGATCGCCTTCTCCCTGCAGAAG CTGGAGGCCATGGCCGTGGACGCGCTCATGATCCAGGCCGAGATGGCCGACGAGGACGCG CCGTTCGAGGTGGCGCCGGCCGCGGGCGACGCCACCACCGTGTTCGACGCGCTGGTGTCG CCCGACGAGTGGTCGGAGTCACGCGGCTCCGACGGCCGCGTCACGGTGGTGGCGGCCATC CAGCTGCGCGACCCGTCGCGGCGCTACGAGGCGGTGGGCGCGCCGATGGTGGCCGTCGTG CAGTCGGCGAGGCTGCTCGGCGCGGCGGGGAACAGCGGCGGGAGGTTCAAGGTGAGGAGC CTGCACGTCGGCGGCGTGCAGCTGCGGTGCCCGGTGGGAGGCGGCGCCGGCGGCGGCCGC GCGAGCTGGGGCGCGGAGAGGCAGAAGCTGACGGCAATGCAGTGGGCGCTCGCGCACGGG CCGGCGCGCGCCGCGGGCAGGAGAGCGCGGACGCCGACGACGACGACGACGCCGTCGTCT CAGGCGAGGCAGCGGCCGGACGTCGTGTGGAGCTTGTCGTCGCGGGTGCTCGCCGGGATG TGGCTCAAGACGGTGCGCAACCCGGATGTCAGAGTTGGCGCCACCGCCGCCGGCAGCGGC GGCGGCGGCAACTGAGACGGCGCCGGCCGGCCGGGATGGCACGTTACACAATTTGTAGGT TTGCATGATATGTATGCAAACTCCAGTACTCCCCGTACTGGTACATTACATAAGTATTAG CATAAAATCGTTTTATCTGAAGTCTGTTTGAAACGCAGGAATTTTATAGAATTTTTAGAA ATCAGATAAAATTCCTGCATTTGAAACAGGCCTTGTGTTGTATGTGTAGGCAGTGTAGCC AAGTTGTCAGTGTGTTACTGTGC