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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0537500-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:20936570:20940422:1 gene:Os10g0537500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Tobamovirus multiplication 3. (Os10t0537500-01)
Sequence

ATGAGGCGGATGCTGGAGGTGGCGGCGGACGCCGGCTCGTCTGCGGCGGCGGCGGCGGCA
AACGGCGCGGTGGACTGGTGGCGCGACGTGAACGAGTCGCCGGTGTGGCAGGACCGCATC
TTCCACGTCCTCGCGGCGCTCTACGGCTTCGTCTCCGCCATCGCGCTGGTCCAATTGATC
AGAATCGAATGTAGGGTGCCCGAATACGGGTGGACAACACAAAAGGTGTTCCATTTCCTC
AACTTCCTCGTGAACGGCGTGCGATCCATAGTGTTTGTGCTGCGACGAAATGTGCAGCTC
ATACATCCAGAGATACTTCAACATGTGCTTCTAGATATGCCCGGGCTCGCATTCTTCACG
ACGTATGCACTTTTGGTGCTCTTCTGGGCCGAGATTTATTATCAGGCGCGTGCAATGTCC
ACTGATGGGCTTAGGCCAACTTTCTATTGGATCAATGCTGTGATCTATGCAATTCAGATA
ATATTATGGATGGTTCTATGGTGGAAACCAGTTCGAGTTATGATCATCTTGTCGAAGATG
TTCTTTGCAGGTGTATCACTGTTTGCGGCTTTTGGGTTTCTTCTCTACGGTGGGAGGTTA
TTCCTGATGTTGCAACGTTTCCCAGTTGAATCGAAAGGACGGCGCAAGAAATTGCAGGAG
GTTGGCTATGTGACTACAATCTGCTTTACTTGTTTCTTGATCAGATGTGTCATGATGTGT
CTCAACACATTTGATAAAGCAGCTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTC
TTTTATTACTTGCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAA
CTGCCACCGAAACGGGGGATCACACAATATCATCCAATTCATTAG

Peptide Sequence

PEP ID

Os10t0537500-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:20936570:20940422:1 gene:Os10g0537500 transcript:Os10t0537500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Tobamovirus multiplication 3. (Os10t0537500-01)
Sequence

MRRMLEVAADAGSSAAAAAANGAVDWWRDVNESPVWQDRIFHVLAALYGFVSAIALVQLI
RIECRVPEYGWTTQKVFHFLNFLVNGVRSIVFVLRRNVQLIHPEILQHVLLDMPGLAFFT
TYALLVLFWAEIYYQARAMSTDGLRPTFYWINAVIYAIQIILWMVLWWKPVRVMIILSKM
FFAGVSLFAAFGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCVMMC
LNTFDKAADLDVLNHPILNFFYYLLVEIVPSALVLFILRKLPPKRGITQYHPIH

Transcript Sequence

Transcript ID

Os10t0537500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:20936570:20940422:1 gene:Os10g0537500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Tobamovirus multiplication 3. (Os10t0537500-01)
Sequence

ACGCGAGTTCGCGAAAGAAAGAAACTGAAATCCGAATTCGATTCCAATCCTCTCGACCAG
CGAGAGGCCTCGCCTTCCTCCTCTCCCCCACGTTGGCGTAGCTCGCGCGCGCGCGCGCGC
CCGCGCCCGAATCCACAAACAGCGTGGTCGCGGGCGGGGGTTCTCGATGAGGCGGATGCT
GGAGGTGGCGGCGGACGCCGGCTCGTCTGCGGCGGCGGCGGCGGCAAACGGCGCGGTGGA
CTGGTGGCGCGACGTGAACGAGTCGCCGGTGTGGCAGGACCGCATCTTCCACGTCCTCGC
GGCGCTCTACGGCTTCGTCTCCGCCATCGCGCTGGTCCAATTGATCAGAATCGAATGTAG
GGTGCCCGAATACGGGTGGACAACACAAAAGGTGTTCCATTTCCTCAACTTCCTCGTGAA
CGGCGTGCGATCCATAGTGTTTGTGCTGCGACGAAATGTGCAGCTCATACATCCAGAGAT
ACTTCAACATGTGCTTCTAGATATGCCCGGGCTCGCATTCTTCACGACGTATGCACTTTT
GGTGCTCTTCTGGGCCGAGATTTATTATCAGGCGCGTGCAATGTCCACTGATGGGCTTAG
GCCAACTTTCTATTGGATCAATGCTGTGATCTATGCAATTCAGATAATATTATGGATGGT
TCTATGGTGGAAACCAGTTCGAGTTATGATCATCTTGTCGAAGATGTTCTTTGCAGGTGT
ATCACTGTTTGCGGCTTTTGGGTTTCTTCTCTACGGTGGGAGGTTATTCCTGATGTTGCA
ACGTTTCCCAGTTGAATCGAAAGGACGGCGCAAGAAATTGCAGGAGGTTGGCTATGTGAC
TACAATCTGCTTTACTTGTTTCTTGATCAGATGTGTCATGATGTGTCTCAACACATTTGA
TAAAGCAGCTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGCT
GGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTGCCACCGAAACG
GGGGATCACACAATATCATCCAATTCATTAGAGCAGCCCTGGCAGGGACAGAAGAGGTTT
TCTTATGAGTAGTCTATACAGCGTGGTAAATACAGAAAAGGCAATGTGAAAGATACCACA
CTTGCTTTCGAGCTTGCCCCAGCTTTTGTAAGAGGAAGCCTTTAGAATCTCAGGGTACCA
TCGTGTGTAAAAATGCAATCTGGTGTTGTTACAGATTTAGAAAGTGTTAACTTATATATA
TATATATACCTTTGTTCTTCTTC