Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0535900-00
CDS Infomation

cds chromosome:IRGSP-1.0:10:20846252:20847616:1 gene:Os10g0535900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EXPA30 description:Similar to ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7). (Os10t0535900-00)
Sequence

ATGGCGGCGGCTTCATCGACGACGGCGACGACGGCCATCCTGGCGGCAGTGATCATCTCT
CTCGCCGGCGCTGCCACCACCGTGGACGCCAAGTTCAGGGCGATGCAGTGGACTCCCGCC
CACGCCACGTTCTACGGCGACGAGACGGCGTCGGAGACGATGGGTGGGGCGTGCGGGTAC
GGCAACCTGTACGCGAGCGGGTACGGGACGGACACGGCGGCGCTGAGCACGACGCTGTTC
AAGGACGGCTACGGGTGCGGGACGTGCTACCAGATGCGGTGCGTGGGGACGGCGTCCTGC
TACAGGGGCTCGCCGGCGATCACCGTGACGGCGACCAACCTGTGCCCGCCCAACTGGGCG
GAGGACCCCGACCGCGGCGGCGGCGGCTGGTGCAACCCGCCGCGGGCGCACTTTGACCTC
TCCAAGCCGGCGTTCATGCGGATGGCCGACTGGCGCGCCGGCATCGTCCCCGTCATGTAC
CGCCGCGTGCCGTGCGCCCGCGCCGGCGGCCTGCGGTTCGCGCTGCAGGGGAACCCGTAC
TGGCTGCTGGCCTACGTCATGAACGTCGCCGGCGCCGGCGACGTCGGGGACATGTGGGTG
AAGGCCGGCGGCGGCGGGGGTTGGGTGCGGATGAGCCACAACTGGGGCGCGTCGTACCAG
GCGTTCGCGCAGCTCGGCGGCCAGGCGCTCAGCTTCAAGGTCACCTCCTACACCACCGGC
CAGACCATCCTGGCCGCCGGCGTCACGCCGGCGAGCTGGTGCTTCGGGCTCACGTACCAG
GCCCGCGTGAACTTCTCCTAG

Peptide Sequence

PEP ID

Os10t0535900-00
PEP Infomation

pep chromosome:IRGSP-1.0:10:20846252:20847616:1 gene:Os10g0535900 transcript:Os10t0535900-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EXPA30 description:Similar to ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7). (Os10t0535900-00)
Sequence

MAAASSTTATTAILAAVIISLAGAATTVDAKFRAMQWTPAHATFYGDETASETMGGACGY
GNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTASCYRGSPAITVTATNLCPPNWA
EDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPY
WLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTG
QTILAAGVTPASWCFGLTYQARVNFS

Transcript Sequence

Transcript ID

Os10t0535900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:20846252:20847616:1 gene:Os10g0535900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EXPA30 description:Similar to ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7). (Os10t0535900-00)
Sequence

AGAAGACCACGAGCAGGACAAGATCGGTGCAATGGCGGCGGCTTCATCGACGACGGCGAC
GACGGCCATCCTGGCGGCAGTGATCATCTCTCTCGCCGGCGCTGCCACCACCGTGGACGC
CAAGTTCAGGGCGATGCAGTGGACTCCCGCCCACGCCACGTTCTACGGCGACGAGACGGC
GTCGGAGACGATGGGTGGGGCGTGCGGGTACGGCAACCTGTACGCGAGCGGGTACGGGAC
GGACACGGCGGCGCTGAGCACGACGCTGTTCAAGGACGGCTACGGGTGCGGGACGTGCTA
CCAGATGCGGTGCGTGGGGACGGCGTCCTGCTACAGGGGCTCGCCGGCGATCACCGTGAC
GGCGACCAACCTGTGCCCGCCCAACTGGGCGGAGGACCCCGACCGCGGCGGCGGCGGCTG
GTGCAACCCGCCGCGGGCGCACTTTGACCTCTCCAAGCCGGCGTTCATGCGGATGGCCGA
CTGGCGCGCCGGCATCGTCCCCGTCATGTACCGCCGCGTGCCGTGCGCCCGCGCCGGCGG
CCTGCGGTTCGCGCTGCAGGGGAACCCGTACTGGCTGCTGGCCTACGTCATGAACGTCGC
CGGCGCCGGCGACGTCGGGGACATGTGGGTGAAGGCCGGCGGCGGCGGGGGTTGGGTGCG
GATGAGCCACAACTGGGGCGCGTCGTACCAGGCGTTCGCGCAGCTCGGCGGCCAGGCGCT
CAGCTTCAAGGTCACCTCCTACACCACCGGCCAGACCATCCTGGCCGCCGGCGTCACGCC
GGCGAGCTGGTGCTTCGGGCTCACGTACCAGGCCCGCGTGAACTTCTCCTAGATCGTTTT
TTTAGTAGCAGCAAGCAGCGAGGAGAACTCACTCTTGATAAGTGAGAATGCTCGGCTCTG
CTGCTCTCTTCTATCGTCTGCTCTGTCGCTGTATCGTAGTT