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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0521900-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:20207343:20209484:1 gene:Os10g0521900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 17, RHOMBOID 17 description:Similar to Membrane protein. (Os10t0521900-01)
Sequence

ATGGCAGCGGCGGCGGCGAGGTACGACGTGGAGAAGGGAGGGAGGAAGAGGGAGGGGGAG
GAGGAGAGGTGCGGTTCGCCGGCGGCGGTGGCGCAGTACCCGCAGCGGGAGGGGGAGAGG
GAGTGGGTGCCGTGGCTCGTCCCGGCCATCCTCGTCGCCAACGTCGTCGTCTTCGCCGTT
GCCATGTACGTCAACAACTGCCCCTCCCACGCCTCTCGCGGCGGCGCGTGCGTCGCCGGA
TTCCTCCGCCGCTTCTCCTTCCAGCCTCTCTCCGAGAACCCGCTCCTCGGCCCCTCCTCC
GCCACATTGCAGAAGATGGGAGCACTGGTATGGGACAAGGTTGTTCATGAGCATCAGGGA
TGGAGGCTAGTGACCTGCATCTGGCTGCACGCCGGTGTTGTTCATCTGCTTGCCAACATG
CTAAGCCTCGTGCTCATCGGACTCAGGCTCGAGCAGCAGTTTGGATACATGAGAATTGGC
ATCATCTACCTTGTTTCTGGCATTGGAGGCAGCGTTCTTTCATCGCTGTTCATCAGAAAC
AGCATCTCCGTCGGTGCTTCTGGCGCTCTCTTTGGTCTTCTTGGAGCCATGCTGTCGGAG
CTTTTCACCAACTGGACCATATACACGAACAAGGCTGCAGCTCTAGTGACGCTCTTGATC
GTCATCGCGATCAACCTCGCCATCGGCATCCTCCCTCACGTCGACAACTTCGCCCACATC
GGAGGGTTCTTGACTGGGTTCCTCCTCGGATTCATCTTCCTGATGCGCCCACACTACGGA
TGGATGCAGCGATATGTCCTGCCTTCCTCTGTCAAGTACACCTCCAAGAAGTACCTGGCT
TATCAATGGATCTTGCTGGCCGTGGCCTCGGTCCTAGCTGTCATCGGATTCGCCGTTGGG
CTGTCGATGCTCTTCAGAGGGGTGAATGCTAATGAACGCTGCCATTGGTGCCACTACCTG
AGCTGCATTCCTACCTCGAGATGGACCTGCGGGAACTGA

Peptide Sequence

PEP ID

Os10t0521900-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:20207343:20209484:1 gene:Os10g0521900 transcript:Os10t0521900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 17, RHOMBOID 17 description:Similar to Membrane protein. (Os10t0521900-01)
Sequence

MAAAAARYDVEKGGRKREGEEERCGSPAAVAQYPQREGEREWVPWLVPAILVANVVVFAV
AMYVNNCPSHASRGGACVAGFLRRFSFQPLSENPLLGPSSATLQKMGALVWDKVVHEHQG
WRLVTCIWLHAGVVHLLANMLSLVLIGLRLEQQFGYMRIGIIYLVSGIGGSVLSSLFIRN
SISVGASGALFGLLGAMLSELFTNWTIYTNKAAALVTLLIVIAINLAIGILPHVDNFAHI
GGFLTGFLLGFIFLMRPHYGWMQRYVLPSSVKYTSKKYLAYQWILLAVASVLAVIGFAVG
LSMLFRGVNANERCHWCHYLSCIPTSRWTCGN

Transcript Sequence

Transcript ID

Os10t0521900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:20207343:20209484:1 gene:Os10g0521900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 17, RHOMBOID 17 description:Similar to Membrane protein. (Os10t0521900-01)
Sequence

ACCACTCGCAGCCGTTTCCACTTCACCATTCACCAACGCAAACGCAAACGCAACGCAGCG
GCGGTAGACGAAGCAGCAGCAGGTAGCGGTTCTTGGTCGGTTCGCCATGGCAGCGGCGGC
GGCGAGGTACGACGTGGAGAAGGGAGGGAGGAAGAGGGAGGGGGAGGAGGAGAGGTGCGG
TTCGCCGGCGGCGGTGGCGCAGTACCCGCAGCGGGAGGGGGAGAGGGAGTGGGTGCCGTG
GCTCGTCCCGGCCATCCTCGTCGCCAACGTCGTCGTCTTCGCCGTTGCCATGTACGTCAA
CAACTGCCCCTCCCACGCCTCTCGCGGCGGCGCGTGCGTCGCCGGATTCCTCCGCCGCTT
CTCCTTCCAGCCTCTCTCCGAGAACCCGCTCCTCGGCCCCTCCTCCGCCACATTGCAGAA
GATGGGAGCACTGGTATGGGACAAGGTTGTTCATGAGCATCAGGGATGGAGGCTAGTGAC
CTGCATCTGGCTGCACGCCGGTGTTGTTCATCTGCTTGCCAACATGCTAAGCCTCGTGCT
CATCGGACTCAGGCTCGAGCAGCAGTTTGGATACATGAGAATTGGCATCATCTACCTTGT
TTCTGGCATTGGAGGCAGCGTTCTTTCATCGCTGTTCATCAGAAACAGCATCTCCGTCGG
TGCTTCTGGCGCTCTCTTTGGTCTTCTTGGAGCCATGCTGTCGGAGCTTTTCACCAACTG
GACCATATACACGAACAAGGCTGCAGCTCTAGTGACGCTCTTGATCGTCATCGCGATCAA
CCTCGCCATCGGCATCCTCCCTCACGTCGACAACTTCGCCCACATCGGAGGGTTCTTGAC
TGGGTTCCTCCTCGGATTCATCTTCCTGATGCGCCCACACTACGGATGGATGCAGCGATA
TGTCCTGCCTTCCTCTGTCAAGTACACCTCCAAGAAGTACCTGGCTTATCAATGGATCTT
GCTGGCCGTGGCCTCGGTCCTAGCTGTCATCGGATTCGCCGTTGGGCTGTCGATGCTCTT
CAGAGGGGTGAATGCTAATGAACGCTGCCATTGGTGCCACTACCTGAGCTGCATTCCTAC
CTCGAGATGGACCTGCGGGAACTGAAGATTTAGTAGAAACGCAACAAACTGAAGACATTA
AGGAGATTTATTGAAAGTGTTTGATGCACAGACATACAATTTTACTGTATATAACTTATA
CAGACATACCCTCCCAGGGGTTTAGTCAGTTCACTTGATTG