Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0519800-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:20098367:20100033:1 gene:Os10g0519800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Paternally Expressed Gene3 description:DUF295-domain protein, Regulation of seed development (Os10t0519800-01)
Sequence

ATGGTGTCACAGGTCGCGTCGCCGCGGCCTCGTCGCGTCCGCCGCGCCGGCGGAGGGGGC
AGCGACTGGGCGTCGCTCCCGGCGGATCTCATGTCCTCCGTGCTCAGGCGCCTCGCCGGT
GACCGCGAGCGCGCCCGGTTCGGCGCCGTGTGCAAGGGGTGGGGGGCCGCCGCCGCCAGG
CTGCCGTCGCGGCCATGGCTCGTCGGGTCCCGCGCCGACGACTGGACCGGCCTGAGCGGC
GCCACCATGTCGTCGTTCTGGCTCTCCCTCGGGCAGCGCGGCCTCGTGCCGTTCGCCGTC
GACGTGCCCGCCGGATCTGAGTACCTGTCCTCCTCCCGTGGCTACCTCGCGCTCTCCAAC
CCCACGGGTAACCCTAGGGTGATCACCCTCTTCAACCCCGTCACCGGCCGCCGGATCCCG
CTGCCGCCGATCGGGTTCTTCAAGAAGTGGCACGACGTGGCCACCATTGTGCTGTCGGCT
GACCCGGACACGGCGGAGGCGTGGTCCGCGGTGGCCGTCGGCTTCCCGGCGAACTGCCTC
GCGTACTACAGCTCCGCCACCAACGACTGGAAGCCCATCAGGTTCAACTACTCCTCCGGC
TACGCCGGCGTCGAGCACTTCAGGGGGCGGTTCTACGTGGCATTCAAGTCGGAGATCAGC
GTGCTCGAGGTTGACGTCGCCACCCCCGCCGCCATTAAGATCGAGATAGCCCACGACGAC
GACGACGAAGACGCGGACGTCTTCGACATCGACCTCAACCTCGACCACGAGACCTCGAAC
AGCGACGACGACGACGACGACGACGACGACTGCGCCGACACCCTCGCCGGGTTGGGCGAC
GAGGATTACCCGCTCAAGTGCCTCGTCGAGACCCACCTGGTGGACTGCGGCGGCGAGCTG
CTGGTCGTGTCGATGCACGACGAGGTGGCGTACAAGAAGCCGAGCCCGGAATCCGCCGTC
GGCCGCAAGCCCCGCAGCCACGACGACGAGCGGTGGGTGGACGTGCACAGGGTGGAGTGG
CTGGAGAGCGGCGCGGCGCGGCTGGTGCGCATGGAGGACCTCGGCGGCTACGCCCTGTTC
GTGGGGCGGAACCACGCCTTCTCGCTCTCGCCGGAGGAGTTCCCGGCGTGCCAGCCCAAC
TGCATCTACAGCGTCGAGCAGCAGGGCCACCCCGACGGGCTCGTCAGGGTGGTGAACTTC
AACGACGACACGACCGAGTGGGCTTGCCCCGACGAGGACATCTTCCCCGACGACGACATG
CGAGGCTCGCCGACGGCAGGCTGGGCTCGCCGTGGCTGGGTCTTCCCCAAATACTCCTAA

Peptide Sequence

PEP ID

Os10t0519800-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:20098367:20100033:1 gene:Os10g0519800 transcript:Os10t0519800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Paternally Expressed Gene3 description:DUF295-domain protein, Regulation of seed development (Os10t0519800-01)
Sequence

MVSQVASPRPRRVRRAGGGGSDWASLPADLMSSVLRRLAGDRERARFGAVCKGWGAAAAR
LPSRPWLVGSRADDWTGLSGATMSSFWLSLGQRGLVPFAVDVPAGSEYLSSSRGYLALSN
PTGNPRVITLFNPVTGRRIPLPPIGFFKKWHDVATIVLSADPDTAEAWSAVAVGFPANCL
AYYSSATNDWKPIRFNYSSGYAGVEHFRGRFYVAFKSEISVLEVDVATPAAIKIEIAHDD
DDEDADVFDIDLNLDHETSNSDDDDDDDDDCADTLAGLGDEDYPLKCLVETHLVDCGGEL
LVVSMHDEVAYKKPSPESAVGRKPRSHDDERWVDVHRVEWLESGAARLVRMEDLGGYALF
VGRNHAFSLSPEEFPACQPNCIYSVEQQGHPDGLVRVVNFNDDTTEWACPDEDIFPDDDM
RGSPTAGWARRGWVFPKYS

Transcript Sequence

Transcript ID

Os10t0519800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:20098367:20100033:1 gene:Os10g0519800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Paternally Expressed Gene3 description:DUF295-domain protein, Regulation of seed development (Os10t0519800-01)
Sequence

GCTTCAGTTCAGATTGTACTAGCAAATCTCCCCCAAGTGGGGAAAAAAAAATTTGGGACA
AGAAAGCGAGAGGAGAGGAGAGCAACCATGGTGTCACAGGTCGCGTCGCCGCGGCCTCGT
CGCGTCCGCCGCGCCGGCGGAGGGGGCAGCGACTGGGCGTCGCTCCCGGCGGATCTCATG
TCCTCCGTGCTCAGGCGCCTCGCCGGTGACCGCGAGCGCGCCCGGTTCGGCGCCGTGTGC
AAGGGGTGGGGGGCCGCCGCCGCCAGGCTGCCGTCGCGGCCATGGCTCGTCGGGTCCCGC
GCCGACGACTGGACCGGCCTGAGCGGCGCCACCATGTCGTCGTTCTGGCTCTCCCTCGGG
CAGCGCGGCCTCGTGCCGTTCGCCGTCGACGTGCCCGCCGGATCTGAGTACCTGTCCTCC
TCCCGTGGCTACCTCGCGCTCTCCAACCCCACGGGTAACCCTAGGGTGATCACCCTCTTC
AACCCCGTCACCGGCCGCCGGATCCCGCTGCCGCCGATCGGGTTCTTCAAGAAGTGGCAC
GACGTGGCCACCATTGTGCTGTCGGCTGACCCGGACACGGCGGAGGCGTGGTCCGCGGTG
GCCGTCGGCTTCCCGGCGAACTGCCTCGCGTACTACAGCTCCGCCACCAACGACTGGAAG
CCCATCAGGTTCAACTACTCCTCCGGCTACGCCGGCGTCGAGCACTTCAGGGGGCGGTTC
TACGTGGCATTCAAGTCGGAGATCAGCGTGCTCGAGGTTGACGTCGCCACCCCCGCCGCC
ATTAAGATCGAGATAGCCCACGACGACGACGACGAAGACGCGGACGTCTTCGACATCGAC
CTCAACCTCGACCACGAGACCTCGAACAGCGACGACGACGACGACGACGACGACGACTGC
GCCGACACCCTCGCCGGGTTGGGCGACGAGGATTACCCGCTCAAGTGCCTCGTCGAGACC
CACCTGGTGGACTGCGGCGGCGAGCTGCTGGTCGTGTCGATGCACGACGAGGTGGCGTAC
AAGAAGCCGAGCCCGGAATCCGCCGTCGGCCGCAAGCCCCGCAGCCACGACGACGAGCGG
TGGGTGGACGTGCACAGGGTGGAGTGGCTGGAGAGCGGCGCGGCGCGGCTGGTGCGCATG
GAGGACCTCGGCGGCTACGCCCTGTTCGTGGGGCGGAACCACGCCTTCTCGCTCTCGCCG
GAGGAGTTCCCGGCGTGCCAGCCCAACTGCATCTACAGCGTCGAGCAGCAGGGCCACCCC
GACGGGCTCGTCAGGGTGGTGAACTTCAACGACGACACGACCGAGTGGGCTTGCCCCGAC
GAGGACATCTTCCCCGACGACGACATGCGAGGCTCGCCGACGGCAGGCTGGGCTCGCCGT
GGCTGGGTCTTCCCCAAATACTCCTAAGGTCGGTAAGCTCAATCTGGATGCCATTATGAT
CCAAGAGGATGCTTTGCTTAATTAGTTGCTTCATGGCTCCAGTATACCATACCAAAATCG
TTCCGAACTTTTGAGTTTAACTACATTGCAAACATTGCATTGTAATTTAAGTTGCCAAAC
ATCGATCTGTGGCTGGGTTTAGTTCGATCGCAAGCATTGTGTATGTGGCCAAACATTTGG
CTGGGTTTAATTTAGTTTCAACTTTCAAGTACTGTGAATGAGTCGCC