Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0518100-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:20024964:20028155:1 gene:Os10g0518100 gene_biotype:protein_coding transcript_biotype:protein_coding description:RabGAP/TBC domain containing protein. (Os10t0518100-01)
Sequence

ATGTGGGCGTGGGGCCTCGTCGAGCGCGCCGCCGCGGGCCTCCTCGGCCCCCTCGGCGGA
GCCCATGGCGGCGGCCGATGGAACACCGCCGTCGCCGTCGGTGTCACGGCCGCCGCCGGC
CTCGTGCTCGTCGTGATCGTTGTCTCCTCCCGCAGAGGTGGGCTCAAATCGCCGTGGTGG
CGGCGGCGGAGGAAGGCCGCGCTTAAGCCCCATGAATGGGTCAGCTTGTTCACGCCGGAG
GGGAAGCTTAAGGACGGCGGAGTGAAGCTTCTGAAGAAAGTTCGAAGCGGAGGGATTGAG
CCAAGTATCAGAGCACAGGTCTGGCCATTCCTTCTGGGAGTTTACAGTCTTGGTAGTTCA
GAATCTGAAAGAGACGCGGTTAAGGCACAGAACAGGAAAGGTTATCTGTTATTGAGGAAC
CATTGCCTGCGAAAATCTGTCTACATCAATGAAGAGAACAAACAATCAAATGAAGCCGCT
GGAGCCAAACATGTGGAGTGTGTTAGTTCTGAAAAAGGCGAAGACACTGTCAATCCAGCT
GGATCTGAAGAAGTACCTGATAAATCTAGTGTAGAAGAGCATCTTGTTGGCGATGACACT
GTTGGTCCCGTTGTATCTGAAGAAGTGGCTGAAAAATCTTTTGTCGAAGATCATCTTGTT
AGTGAGGAGGAAAATCCATCTGCCAATCCAGGAGAAGAAGTGCAGGATGACACATCTAAA
ACAAGCCCTGAGAAGCTGACAGATGGAAATCATTCTTCATCTAGTTCATCTAGTGAGGAA
GAAAGTGAATCAAGTGGCCTGACTCATGTAGAAACATCTCATATGGTTGTCGCCTCAGTT
CAGCAATCTTTAACTGAGGATGAACAAGAAAGTATCCCGAGATATTCCAACACAGGAGGA
AACATGGAAAATGATAGCGAGTTATCTAAGGCTGCTCGTCCTGTGAAATCTGTACGCACA
ATTGAGGATTTTGAGACTTGGCAACGAATTATCCGCTTGGATGCAGTTCGTGCTAATGAT
GAATGGGTTTCTTACTCCCCATCTCAAGCTGTAGTTTCCAGGGAGAAGGCAATTGAATCT
GCTAAAGCTGTTTGTCTGAAAGATTACGAACATTTGGAACCACATAGGATCCGTCATGCA
GCACGCCTTGTTCCAATTCTTGAGGCTTATGCCATCTATGACCCAGAAATTGGATATTGC
CAGGGCATGAGCGACCTTCTTGCACCTCTACTTGCCGTACTGGAAGATGACAATGAAGCC
TTCTGGTGCTTTGCTGGTTTTATGAGGAAAGCCCGTCATAATTTCAGGCTTGATGAAGTG
GGCATTCGCAGGCAACTGAACATGGTAGCCAGGATAATCAAATACAAGGACTTCCATCTT
TACAGACATTTGGAGATGCTCCAAGCTGAGGACTGCTTCTTTGTTTACAGAATGGTGGTG
GTCATGTTCCGAAGGGAGCTGACCTTTGAGCAGACCCTCTGTCTATGGGAGGTTATGTGG
GCCGATCAGGCAGCAAACCGTGCTGGAATTGCAAAATCATCGTTGGGGAAACTGCGGTTA
GGAGCCCCTCCAACTGATGACTTGCTACTATATGCAATTGCGGCCAGCGTGCTGCAGAAG
AGGAAACTGATAATAGAGAGCTATAGCAGCATGGATGAGATCATAAGGGAGTGTAACAGC
ATGGCTGGGCAGCTGGACATTTGGAAGCTCCTGGACGATGCGCACGATCTAGTAACGACC
CTTCACGGTAGGATTGAGTAG

Peptide Sequence

PEP ID

Os10t0518100-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:20024964:20028155:1 gene:Os10g0518100 transcript:Os10t0518100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:RabGAP/TBC domain containing protein. (Os10t0518100-01)
Sequence

MWAWGLVERAAAGLLGPLGGAHGGGRWNTAVAVGVTAAAGLVLVVIVVSSRRGGLKSPWW
RRRRKAALKPHEWVSLFTPEGKLKDGGVKLLKKVRSGGIEPSIRAQVWPFLLGVYSLGSS
ESERDAVKAQNRKGYLLLRNHCLRKSVYINEENKQSNEAAGAKHVECVSSEKGEDTVNPA
GSEEVPDKSSVEEHLVGDDTVGPVVSEEVAEKSFVEDHLVSEEENPSANPGEEVQDDTSK
TSPEKLTDGNHSSSSSSSEEESESSGLTHVETSHMVVASVQQSLTEDEQESIPRYSNTGG
NMENDSELSKAARPVKSVRTIEDFETWQRIIRLDAVRANDEWVSYSPSQAVVSREKAIES
AKAVCLKDYEHLEPHRIRHAARLVPILEAYAIYDPEIGYCQGMSDLLAPLLAVLEDDNEA
FWCFAGFMRKARHNFRLDEVGIRRQLNMVARIIKYKDFHLYRHLEMLQAEDCFFVYRMVV
VMFRRELTFEQTLCLWEVMWADQAANRAGIAKSSLGKLRLGAPPTDDLLLYAIAASVLQK
RKLIIESYSSMDEIIRECNSMAGQLDIWKLLDDAHDLVTTLHGRIE

Transcript Sequence

Transcript ID

Os10t0518100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:20024964:20028155:1 gene:Os10g0518100 gene_biotype:protein_coding transcript_biotype:protein_coding description:RabGAP/TBC domain containing protein. (Os10t0518100-01)
Sequence

AGGTGGCCGGAATCCATCCATCGCGAGAGCAGAGGGAGGGGGATCGCGGCGGCGGCGGCA
GCTGCGGCGAAGGGGGAAGCGCCGGAACGGGAGCCGTGGAGCGATCCGTCGGGCATCGGC
GCCCGATGTGGGCGTGGGGCCTCGTCGAGCGCGCCGCCGCGGGCCTCCTCGGCCCCCTCG
GCGGAGCCCATGGCGGCGGCCGATGGAACACCGCCGTCGCCGTCGGTGTCACGGCCGCCG
CCGGCCTCGTGCTCGTCGTGATCGTTGTCTCCTCCCGCAGAGGTGGGCTCAAATCGCCGT
GGTGGCGGCGGCGGAGGAAGGCCGCGCTTAAGCCCCATGAATGGGTCAGCTTGTTCACGC
CGGAGGGGAAGCTTAAGGACGGCGGAGTGAAGCTTCTGAAGAAAGTTCGAAGCGGAGGGA
TTGAGCCAAGTATCAGAGCACAGGTCTGGCCATTCCTTCTGGGAGTTTACAGTCTTGGTA
GTTCAGAATCTGAAAGAGACGCGGTTAAGGCACAGAACAGGAAAGGTTATCTGTTATTGA
GGAACCATTGCCTGCGAAAATCTGTCTACATCAATGAAGAGAACAAACAATCAAATGAAG
CCGCTGGAGCCAAACATGTGGAGTGTGTTAGTTCTGAAAAAGGCGAAGACACTGTCAATC
CAGCTGGATCTGAAGAAGTACCTGATAAATCTAGTGTAGAAGAGCATCTTGTTGGCGATG
ACACTGTTGGTCCCGTTGTATCTGAAGAAGTGGCTGAAAAATCTTTTGTCGAAGATCATC
TTGTTAGTGAGGAGGAAAATCCATCTGCCAATCCAGGAGAAGAAGTGCAGGATGACACAT
CTAAAACAAGCCCTGAGAAGCTGACAGATGGAAATCATTCTTCATCTAGTTCATCTAGTG
AGGAAGAAAGTGAATCAAGTGGCCTGACTCATGTAGAAACATCTCATATGGTTGTCGCCT
CAGTTCAGCAATCTTTAACTGAGGATGAACAAGAAAGTATCCCGAGATATTCCAACACAG
GAGGAAACATGGAAAATGATAGCGAGTTATCTAAGGCTGCTCGTCCTGTGAAATCTGTAC
GCACAATTGAGGATTTTGAGACTTGGCAACGAATTATCCGCTTGGATGCAGTTCGTGCTA
ATGATGAATGGGTTTCTTACTCCCCATCTCAAGCTGTAGTTTCCAGGGAGAAGGCAATTG
AATCTGCTAAAGCTGTTTGTCTGAAAGATTACGAACATTTGGAACCACATAGGATCCGTC
ATGCAGCACGCCTTGTTCCAATTCTTGAGGCTTATGCCATCTATGACCCAGAAATTGGAT
ATTGCCAGGGCATGAGCGACCTTCTTGCACCTCTACTTGCCGTACTGGAAGATGACAATG
AAGCCTTCTGGTGCTTTGCTGGTTTTATGAGGAAAGCCCGTCATAATTTCAGGCTTGATG
AAGTGGGCATTCGCAGGCAACTGAACATGGTAGCCAGGATAATCAAATACAAGGACTTCC
ATCTTTACAGACATTTGGAGATGCTCCAAGCTGAGGACTGCTTCTTTGTTTACAGAATGG
TGGTGGTCATGTTCCGAAGGGAGCTGACCTTTGAGCAGACCCTCTGTCTATGGGAGGTTA
TGTGGGCCGATCAGGCAGCAAACCGTGCTGGAATTGCAAAATCATCGTTGGGGAAACTGC
GGTTAGGAGCCCCTCCAACTGATGACTTGCTACTATATGCAATTGCGGCCAGCGTGCTGC
AGAAGAGGAAACTGATAATAGAGAGCTATAGCAGCATGGATGAGATCATAAGGGAGTGTA
ACAGCATGGCTGGGCAGCTGGACATTTGGAAGCTCCTGGACGATGCGCACGATCTAGTAA
CGACCCTTCACGGTAGGATTGAGTAGTGATATACTGATACACTCTACTCATTTTGTACAC
GGCTTGTTGTATTACTTTACACATTTTCATCCTTACGTCATATTTCATCTCTTTTTCAC