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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0516701-00
CDS Infomation

cds chromosome:IRGSP-1.0:10:19956384:19957356:-1 gene:Os10g0516701 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to fringe-related protein. (Os10t0516701-00)
Sequence

ATGCGCAAGCCCCACCACGCCGCGCAGCCTCCGCCGCCGCCGCCGCTCCCGCTCCCGCTC
CCGCTCCCGCCGCGGAACTGCCCGCTCGCGACCGCGGTCCTGGCGCTCCTCTCCGTGCTC
CTCGCCACGGCGCTGTGGGTCCTCCTCGTGCTGTCCCCGGCGTCCCACGCGAGGGGCCCA
GCCGCGGGGCTGTCGGATGCGGCGGACGCGGAGGCGTTTGCGGTGGCGGGCGGAGGAGGC
GGAGGCGGCGGGGAGGGCGCGGAGGCCCCGCTGTCGCTCGGCCACATCGTGTTCGGGATC
GCGGGCTCCGCGCACCTCTGGCCGCGCCGCCGGGAGTACGTCCGGATGTGGTGGGACCCG
GCCGCCATGCGCGGGCACGTGTGGCTCGACGCCGGGGCGCCCGCGGCGCCGGGGCCGAGC
GCGTCCGGGGAGGGGTCCCTCCTCCCGCCGATCCGGGTGTCGGAGGACACGTCGCGGTTC
CGGTACACGAACCCCACGGGCCACCCCTCGGGCCTCCGGATCGCGCGCATCGCCGCCGAG
GCCGTGCGGCTCGTGGGCGGCGGCGGCGGGGGCGCGCGGTGGGTGGTGCTCGTGGACGAC
GACACCGTGGTGTCCGCGGACAACCTGGTGGCCGTGCTCGGGAAGTACGACTGGAGGGAG
ATGGTGTACGTCGGCGCGCCGTCGGAGAGCCACTCGGCGAACACCTACTTCAGCCACAGT
ATGGCGTTCGGGGGCGGCGGCGTCGCGCTCAGCCTCCCCCTCGCCACGGCGCTCGCGCGG
ACGCTCGACGTCTGCATCGAGAGGTACCCCAAGCTGTACGGAAGTGACGATCGCCTCCAT
GCTTGCATCACCGAGCTCGGAGTGCCCCTCTCCCGCGAGTACGGATTCCATCAGGTATGA

Peptide Sequence

PEP ID

Os10t0516701-00
PEP Infomation

pep chromosome:IRGSP-1.0:10:19956384:19957356:-1 gene:Os10g0516701 transcript:Os10t0516701-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to fringe-related protein. (Os10t0516701-00)
Sequence

MRKPHHAAQPPPPPPLPLPLPLPPRNCPLATAVLALLSVLLATALWVLLVLSPASHARGP
AAGLSDAADAEAFAVAGGGGGGGGEGAEAPLSLGHIVFGIAGSAHLWPRRREYVRMWWDP
AAMRGHVWLDAGAPAAPGPSASGEGSLLPPIRVSEDTSRFRYTNPTGHPSGLRIARIAAE
AVRLVGGGGGGARWVVLVDDDTVVSADNLVAVLGKYDWREMVYVGAPSESHSANTYFSHS
MAFGGGGVALSLPLATALARTLDVCIERYPKLYGSDDRLHACITELGVPLSREYGFHQV

Transcript Sequence

Transcript ID

Os10t0516701-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:19956384:19957356:-1 gene:Os10g0516701 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to fringe-related protein. (Os10t0516701-00)
Sequence

CATCGCCACGTCCCCGCCACCCCCCTTCAATGTCCGTCGCCACCGGCGGCGGCGTCGTCC
TCTCGCGTGCCCAATGCGCAAGCCCCACCACGCCGCGCAGCCTCCGCCGCCGCCGCCGCT
CCCGCTCCCGCTCCCGCTCCCGCCGCGGAACTGCCCGCTCGCGACCGCGGTCCTGGCGCT
CCTCTCCGTGCTCCTCGCCACGGCGCTGTGGGTCCTCCTCGTGCTGTCCCCGGCGTCCCA
CGCGAGGGGCCCAGCCGCGGGGCTGTCGGATGCGGCGGACGCGGAGGCGTTTGCGGTGGC
GGGCGGAGGAGGCGGAGGCGGCGGGGAGGGCGCGGAGGCCCCGCTGTCGCTCGGCCACAT
CGTGTTCGGGATCGCGGGCTCCGCGCACCTCTGGCCGCGCCGCCGGGAGTACGTCCGGAT
GTGGTGGGACCCGGCCGCCATGCGCGGGCACGTGTGGCTCGACGCCGGGGCGCCCGCGGC
GCCGGGGCCGAGCGCGTCCGGGGAGGGGTCCCTCCTCCCGCCGATCCGGGTGTCGGAGGA
CACGTCGCGGTTCCGGTACACGAACCCCACGGGCCACCCCTCGGGCCTCCGGATCGCGCG
CATCGCCGCCGAGGCCGTGCGGCTCGTGGGCGGCGGCGGCGGGGGCGCGCGGTGGGTGGT
GCTCGTGGACGACGACACCGTGGTGTCCGCGGACAACCTGGTGGCCGTGCTCGGGAAGTA
CGACTGGAGGGAGATGGTGTACGTCGGCGCGCCGTCGGAGAGCCACTCGGCGAACACCTA
CTTCAGCCACAGTATGGCGTTCGGGGGCGGCGGCGTCGCGCTCAGCCTCCCCCTCGCCAC
GGCGCTCGCGCGGACGCTCGACGTCTGCATCGAGAGGTACCCCAAGCTGTACGGAAGTGA
CGATCGCCTCCATGCTTGCATCACCGAGCTCGGAGTGCCCCTCTCCCGCGAGTACGGATT
CCATCAGGTATGA