Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0516400-02
CDS Infomation

cds chromosome:IRGSP-1.0:10:19915850:19916884:-1 gene:Os10g0516400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os10t0516400-01);Conserved hypothetical protein. (Os10t0516400-02)
Sequence

ATGACGGTCTCGTCGCCGTCGGCGGAGGAGCCGTTCCGGGTGTTCGTCGGCTACGACCCG
CGGGAGGACGAGGCGTACGAGGTGTGCCGCCGCAGCCTGCTCCGCCACGCCTCCATCCCC
GTCGACGTCCGCCCCATCCGGCAGCCGGATCTCCGCGCGGCGGGGCTCTACTGGCGGGAG
CGGGGGCCCACCGAGAGCACCGAGTTCTCCTTCACCCGCTTCCTCACACCCTACCTCGCC
GGCTACCGCGGCTGGGCGCTCTTCGTCGACTGCGACTTCCTCTACCTCGCCGACATCGCC
GGCCTCCTCGCCTGCCTCCCCTCCTCCGACCCCGACCACCGCCTCGCCGTCGCCTGCGTC
AAGCACGAGTACGCCCCCGCCGAGGCGACCAAGATGGACGGCGCCATCCAGACCGTGTAC
CCGCGCAAGAACTGGTCGTCCATGGTGCTCTACAACTGCGGCCACCCCAAGAACGTCGCC
GCGCTCACCCCGGACGCCGTCAGCACCCAGACCGGCGCCTTCCTCCACCGATTCGCCTGG
CTCGATGACGACGAGATCGGCGAGATCCCCTTCGCCTGGAACTTCCTCGTCGGCCACAAC
AAGGTCGACCCCGCCGACCCGTCCACGCAGCCCAAGGCCATCCACTACACCTCCGGCGGG
CCGTGGTTCGAGAGGTACAGGAACTGCGACTTCGCCGAGCTCTGGATCAAGGAGGCCGAC
GAGCTCAAGGCCGACAAGGAGAAGCAGAAGCAGCAGCAGATCGTCATGGCCAACGGCGAG
AAGGAGAAAGACGAGGAGGGGAATTGA

Peptide Sequence

PEP ID

Os10t0516400-02
PEP Infomation

pep chromosome:IRGSP-1.0:10:19915850:19916884:-1 gene:Os10g0516400 transcript:Os10t0516400-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os10t0516400-01);Conserved hypothetical protein. (Os10t0516400-02)
Sequence

MTVSSPSAEEPFRVFVGYDPREDEAYEVCRRSLLRHASIPVDVRPIRQPDLRAAGLYWRE
RGPTESTEFSFTRFLTPYLAGYRGWALFVDCDFLYLADIAGLLACLPSSDPDHRLAVACV
KHEYAPAEATKMDGAIQTVYPRKNWSSMVLYNCGHPKNVAALTPDAVSTQTGAFLHRFAW
LDDDEIGEIPFAWNFLVGHNKVDPADPSTQPKAIHYTSGGPWFERYRNCDFAELWIKEAD
ELKADKEKQKQQQIVMANGEKEKDEEGN

Transcript Sequence

Transcript ID

Os10t0516400-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:19915850:19916884:-1 gene:Os10g0516400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os10t0516400-01);Conserved hypothetical protein. (Os10t0516400-02)
Sequence

ATCTCGCCGCCCATTAAGGCCCGAGAGCCCCCATTCCGCCAGATCCATGACGGTCTCGTC
GCCGTCGGCGGAGGAGCCGTTCCGGGTGTTCGTCGGCTACGACCCGCGGGAGGACGAGGC
GTACGAGGTGTGCCGCCGCAGCCTGCTCCGCCACGCCTCCATCCCCGTCGACGTCCGCCC
CATCCGGCAGCCGGATCTCCGCGCGGCGGGGCTCTACTGGCGGGAGCGGGGGCCCACCGA
GAGCACCGAGTTCTCCTTCACCCGCTTCCTCACACCCTACCTCGCCGGCTACCGCGGCTG
GGCGCTCTTCGTCGACTGCGACTTCCTCTACCTCGCCGACATCGCCGGCCTCCTCGCCTG
CCTCCCCTCCTCCGACCCCGACCACCGCCTCGCCGTCGCCTGCGTCAAGCACGAGTACGC
CCCCGCCGAGGCGACCAAGATGGACGGCGCCATCCAGACCGTGTACCCGCGCAAGAACTG
GTCGTCCATGGTGCTCTACAACTGCGGCCACCCCAAGAACGTCGCCGCGCTCACCCCGGA
CGCCGTCAGCACCCAGACCGGCGCCTTCCTCCACCGATTCGCCTGGCTCGATGACGACGA
GATCGGCGAGATCCCCTTCGCCTGGAACTTCCTCGTCGGCCACAACAAGGTCGACCCCGC
CGACCCGTCCACGCAGCCCAAGGCCATCCACTACACCTCCGGCGGGCCGTGGTTCGAGAG
GTACAGGAACTGCGACTTCGCCGAGCTCTGGATCAAGGAGGCCGACGAGCTCAAGGCCGA
CAAGGAGAAGCAGAAGCAGCAGCAGATCGTCATGGCCAACGGCGAGAAGGAGAAAGACGA
GGAGGGGAATTGAATCGAATCCAATTGAATTCATTGTGCCGCATTGCGTTGCAATTTTGC
ATCGAATTGGTTCAAATCTGTTGTTTATTGGGTTGGGGTTGGGTGGTAGGCTATGAGTGG
ATAGCTCTAGTATTGGTAGTAGTACGCTTTTGTGTAGCGGCAAATCAATCTATCTATGAG
TCCTCAATGTTCAGG