Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0514600-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:19840596:19842443:-1 gene:Os10g0514600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Clone ZZD584 mRNA sequence. (Os10t0514600-01)
Sequence

ATGGCCGCCGCGGTCGCCGCCTCCCCGGCGCAATCCCGCAAGACGGAGACCTACACCGAC
ACCAAGCGCCGCGACGACGTCCGCGGCCTCAACATTGCCGCGGGGCGCGCCGTCGCCGCC
GCCGCGCGCACCTCCCTCGGCCCACGCGGCATGGACAAGATGATCTCCTCCAGCTCCTCC
GGCGGCGACCAGGCCGTCATCATCACCAACGACGGCGCCACCATCCTCTCCCGCATGCCC
CTCCTCCAGCCGGCCGCCCGCATGCTCGCCGACCTCTCCCGCTCCCAGGACGCCGCCGCC
GGGGACGGCACCACCACCGTCGTCGTCCTCGCCGGGTCCCTCCTCCGCCGCGCCCAGTCC
CTCCTCTCCGCCGGCGCCCACCCCACCGCGGCCGCCGACGCCCTCCACCTCCTCGCCGCG
CGCGCCGTGGAGGTCCTCCACGGCATGGCCATCCCCGTCGAGCTCTCCGACCGCGACGCC
CTCGTCAAGTCGGCATCCACCGCCCTCAACTCCAAGGTCGTCTCCCAGTACTCCACCCTC
CTCTCCCCGCTCGCCGTCGACGCCGCCCTCGCCGTCGTCGACCCGGCCCACCCGTATCTC
CTCGACCTCCGCGACATCCGCGTGGTGAAGAAGCTCGGCTGCACGGTCGACGACACCGAG
CTCATCCGCGGCCTCGTCCTCAACAAGAAGGCCAGCCATGTCGCCGGAGGGCCAACTCGG
ATCGGGGACGCCAAGATCGCCGTGATCCAGTTCCAGGTCTCGCCTCCCAAGACGGACATC
GAGCACAGCGTCGTCGTGTCGGATTACGCGCAGATGGATCGAATCCTCCGCGAGGAGCGG
AATTACATCCTTGGCATGGTGAAGAAGATCAAGGCATCCGGATGCAACGTCCTGCTCATC
CAGAAAAGCATCCTGCGTGATTCAGTCACCGATCTGTCGCTCCATTATCTCGCAAAGGCC
AAGATCATGGTCGTGAAGGATGTCGAGAGGGACGAGATCGAGTTCATCACCAAGACCCTC
AACTGCATGCCAATTGCTAGCATCGAACATCTCCGCGAGGACAAGCTTGGTCATGCACAT
CTGGTTGAGGAAATCTCGGTTGGTGATGGTAACAATAACAAGATTGTCAAGATCACTGGC
ATCAAGAACATGGGAAGAACAGCAACTGTTCTTGTCCGGGGATCCAACCAGATGGTGATC
GACGAAGCTCAGCGCAGCCTCCACGACGCATTCTGTGTGATCAGGTGCTTGGTGAACAAG
AGGTTTCTGATCGCTGGTGGTGGTGCTCCTGAGATCGAGATGTCGATGCAGCTGGCTGCT
TGGGCGAAGGAGCTGAGAGGGATGGAGAGTTACTGCGTCAGGGAGTTCGCCGAGGCGCTC
GAGGTCATCCCTTACACGTTGGCAGAGAATGCAGGGCTCGATCCCATCTCCACTGTCACC
GAGCTCCGGAATCGCCATGCCAAGGGCGAGAAGAACGCCGGGATCAACGTGAGGAAGGGT
CGGATCACGAACATCCTGGAGGAGAATGTCGTGCAGCCACTGCTGGTGAGCACGAGCGCC
GTCACGCTGGCCTGCGAGTGTGTTAGGATGATACTGAAGATTGATGATATTGTCACCGTG
AGGTAA

Peptide Sequence

PEP ID

Os10t0514600-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:19840596:19842443:-1 gene:Os10g0514600 transcript:Os10t0514600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Clone ZZD584 mRNA sequence. (Os10t0514600-01)
Sequence

MAAAVAASPAQSRKTETYTDTKRRDDVRGLNIAAGRAVAAAARTSLGPRGMDKMISSSSS
GGDQAVIITNDGATILSRMPLLQPAARMLADLSRSQDAAAGDGTTTVVVLAGSLLRRAQS
LLSAGAHPTAAADALHLLAARAVEVLHGMAIPVELSDRDALVKSASTALNSKVVSQYSTL
LSPLAVDAALAVVDPAHPYLLDLRDIRVVKKLGCTVDDTELIRGLVLNKKASHVAGGPTR
IGDAKIAVIQFQVSPPKTDIEHSVVVSDYAQMDRILREERNYILGMVKKIKASGCNVLLI
QKSILRDSVTDLSLHYLAKAKIMVVKDVERDEIEFITKTLNCMPIASIEHLREDKLGHAH
LVEEISVGDGNNNKIVKITGIKNMGRTATVLVRGSNQMVIDEAQRSLHDAFCVIRCLVNK
RFLIAGGGAPEIEMSMQLAAWAKELRGMESYCVREFAEALEVIPYTLAENAGLDPISTVT
ELRNRHAKGEKNAGINVRKGRITNILEENVVQPLLVSTSAVTLACECVRMILKIDDIVTV
R

Transcript Sequence

Transcript ID

Os10t0514600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:19840596:19842443:-1 gene:Os10g0514600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Clone ZZD584 mRNA sequence. (Os10t0514600-01)
Sequence

AATCTGAAGAGCACACGAAGCCCTAATTAACCAAAACCTCCGCCGCCGCCGCCATGGCCG
CCGCGGTCGCCGCCTCCCCGGCGCAATCCCGCAAGACGGAGACCTACACCGACACCAAGC
GCCGCGACGACGTCCGCGGCCTCAACATTGCCGCGGGGCGCGCCGTCGCCGCCGCCGCGC
GCACCTCCCTCGGCCCACGCGGCATGGACAAGATGATCTCCTCCAGCTCCTCCGGCGGCG
ACCAGGCCGTCATCATCACCAACGACGGCGCCACCATCCTCTCCCGCATGCCCCTCCTCC
AGCCGGCCGCCCGCATGCTCGCCGACCTCTCCCGCTCCCAGGACGCCGCCGCCGGGGACG
GCACCACCACCGTCGTCGTCCTCGCCGGGTCCCTCCTCCGCCGCGCCCAGTCCCTCCTCT
CCGCCGGCGCCCACCCCACCGCGGCCGCCGACGCCCTCCACCTCCTCGCCGCGCGCGCCG
TGGAGGTCCTCCACGGCATGGCCATCCCCGTCGAGCTCTCCGACCGCGACGCCCTCGTCA
AGTCGGCATCCACCGCCCTCAACTCCAAGGTCGTCTCCCAGTACTCCACCCTCCTCTCCC
CGCTCGCCGTCGACGCCGCCCTCGCCGTCGTCGACCCGGCCCACCCGTATCTCCTCGACC
TCCGCGACATCCGCGTGGTGAAGAAGCTCGGCTGCACGGTCGACGACACCGAGCTCATCC
GCGGCCTCGTCCTCAACAAGAAGGCCAGCCATGTCGCCGGAGGGCCAACTCGGATCGGGG
ACGCCAAGATCGCCGTGATCCAGTTCCAGGTCTCGCCTCCCAAGACGGACATCGAGCACA
GCGTCGTCGTGTCGGATTACGCGCAGATGGATCGAATCCTCCGCGAGGAGCGGAATTACA
TCCTTGGCATGGTGAAGAAGATCAAGGCATCCGGATGCAACGTCCTGCTCATCCAGAAAA
GCATCCTGCGTGATTCAGTCACCGATCTGTCGCTCCATTATCTCGCAAAGGCCAAGATCA
TGGTCGTGAAGGATGTCGAGAGGGACGAGATCGAGTTCATCACCAAGACCCTCAACTGCA
TGCCAATTGCTAGCATCGAACATCTCCGCGAGGACAAGCTTGGTCATGCACATCTGGTTG
AGGAAATCTCGGTTGGTGATGGTAACAATAACAAGATTGTCAAGATCACTGGCATCAAGA
ACATGGGAAGAACAGCAACTGTTCTTGTCCGGGGATCCAACCAGATGGTGATCGACGAAG
CTCAGCGCAGCCTCCACGACGCATTCTGTGTGATCAGGTGCTTGGTGAACAAGAGGTTTC
TGATCGCTGGTGGTGGTGCTCCTGAGATCGAGATGTCGATGCAGCTGGCTGCTTGGGCGA
AGGAGCTGAGAGGGATGGAGAGTTACTGCGTCAGGGAGTTCGCCGAGGCGCTCGAGGTCA
TCCCTTACACGTTGGCAGAGAATGCAGGGCTCGATCCCATCTCCACTGTCACCGAGCTCC
GGAATCGCCATGCCAAGGGCGAGAAGAACGCCGGGATCAACGTGAGGAAGGGTCGGATCA
CGAACATCCTGGAGGAGAATGTCGTGCAGCCACTGCTGGTGAGCACGAGCGCCGTCACGC
TGGCCTGCGAGTGTGTTAGGATGATACTGAAGATTGATGATATTGTCACCGTGAGGTAAG
GTTAATTAATTATGTGGTGGCTGACCGTGCTGGCCTCTGCTCTATTTTGTCTGTCATGTT
ATTTAGGAGATTTGATATTTTGACACCTTCTAAAGTGGCACGCTTTCGTTGATTCAGATG
GTTCGAAATATCATGCATTCTCACAACTGTCAATAAAATCAAATTGGT