Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os10t0512800-01
CDS Infomation	cds chromosome:IRGSP-1.0:10:19756786:19768053:-1 gene:Os10g0512800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein OsRFPHC-10, RING-HC protein 10, SKIP interacting protein 13, SKIPa-interacting protein 13, SKIPa-interacting protein 13 description:Similar to predicted protein. (Os10t0512800-01)
Sequence	ATGTCGTCGAGGCCGTCGTCGTCGGCGTCGTCGAGGCGGAGCAGCTCGCCGTTCTCGGCG GGGAGCAGGCGGCCTCCGACCTCGTCGTCGTCCTCCGCCGGCTCGTACCTCACGGGCCGC CTCATGCCGCGGTCGTACTCCACGGCGTCGTCCGTGTCCTCATCCTCCCATTTCTTCGGC GGCGGGGGTGGGAGCGGGGGAGGCTCGAGGTCCACCACCCCGGGGCGGAGGGGGAGCTCC TCCTCCTCCTTGGTGGGGCCGGTTCCGTCGCCGCCGTCGCCCGTGCCGTTCCCCAGCGCG GAGGAGCTCGTCATCGAGGACACCTCCCGATCCGGGGACAGCATATCCGTCACCATCCGC TTCCGGCCGCTCAGCGAGCGGGAGATCCAGCGCGGCGACGAGATCTCGTGGTATGCTGAT GGGGAACGGCTTGTGCGCTGCGAGTACAACCCGGCGACGGCTTATGGTTACGATAGAGTT TTTGGTCCTAAAACAACTACTGAGGCTGTATATGATGTTGCTGCCCGGCCTGTTGTTAAA GGTGCCATGGAGGGTATAAATGGTACGGTTTTTGCTTATGGTGTCACAAGTAGTGGGAAG ACCCACACAATGCATGGTGATCAGAATTGCCCTGGAATAATCCCATTAGCCATCAAGGAT GTATTCAGCTTAATTCAAGATACTCCTGGGAGGGAATTTTTGCTTCGTGTCTCATATCTG GAAATCTATAACGAGGTGATAAATGATCTACTTGATCCTACTGGCCAAAATCTGCGTGTG AGGGAAGATGCACAGGGAACATATGTAGAAGGCATAAAAGAAGAAGTTGTTTTATCTCCA GGGCATGCTCTTTCTTTTATTGCTGCCGGTGAAGAGCATCGGCATGTTGGTTCAAACAAC TTCAACTTATTTAGCAGCCGAAGTCATACCATTTTCACATTGATGATTGAAAGCAGCGCT CATGGTGACGAGTATGATGGAGTCATGTACTCACAACTTAATTTGATTGATCTAGCTGGG TCAGAGAGTTCTAAGACAGAGACTACAGGACTGAGAAGAAGGGAAGGATCATACATTAAC AAGAGTCTTTTAACTCTGGGAACTGTTATTGGGAAACTCAGTGAAGGGAGAGCAACACAT ATACCATACCGTGATTCTAAGTTGACTCGCCTGCTGCAGTCATCATTGAGTGGCCATGGC CATGTTTCACTGATTTGCACAATCACCCCTGCATCGAGTAACATGGAGGAAACCCATAAT ACATTGAAATTTGCAAGCAGAGCAAAACGTGTTGAAATTTATGCTGCTCGTAACCGGATG ATCGATGAGAAGTCTTTGATCAAGAAATATCAGAGAGAAATATCCTCTCTGAAGCAAGAG CTTGATCAGCTAAGGAGAGGATTGATTGGAGGTGCTAGTCAGGAAGAAATCATGATTTTA CGCCAACAGTTGGAGGAGGGCCAGGTAAAAATGCAATCTCGCCTGGAGGAGGAAGAGGAA GCAAAAGCTGCTCTGATGAGCAGAATACAACGCTTGACCAAGTTAATACTTGTTTCTACA AAGAACAATATTCCTGCCTTGACAGATACGTCTAGTCATCAGCGCCATAATTCGGTCAAT GAGGAAGATAAAGTAAGCACATCACAAGATAGTTCTATGCTTGTCCAAAATGATAGTGCC ACGAAAGATTCGCTATCATCTGCTTCGCCAGATGCTGTGGATGAGATCAATCAACTAAGA TGTGCTAGTGGAGACCATTCTTCGATTGCTGGTTCTGGACCCGATGAAATGCAGGGAGGG ATCACCGCATCGGATCAAATGGATCTACTGATTGAGCAAGTGAAGATGCTTGCTGGTGAA ATTGCTTTTGGTACCAGTTCGCTGAAAAGACTGATTGAGCAATCTATTGAAGACCCTGAA GGGACGAAGAATCAAATAGATAATTTAGAGCGTGAAATCCGGGAGAAGAGAAGGCATATG CGAGCCCTGGAGCAAAAACTTATGGAAAGCGGTGAGGCATCAGTTGCTAATGCTTCCATG ATGGATATGCAACAGACGATTACCAAGCTGACAGCTCAGTGCAGTGAGAAGGCTTTTGAA TTAGAGTTAAGATCAGCTGATAATCGCGTCCTTCAGGAGCAGCTACAACAGAAGAATGTG GAAATCAATGAGTTACAAGAAAAAGTTCTACGCCTTGAGCAACAGCTGACAACAAATACT GAGGCATCCCCTGAACAATGCACAGAACATGAGCTTCATGATTTGAAATCTAAACTTCAG TTGAAGGAAGCAGAAAGTGAAAAGCTTAAATACGAGCACATGAAAATCACTGAGGAAAAT CGTGAATTGGTCAACCAGAACAGCACATTATGTGAGGAAGTTGCCTATGCAAAAGAACTG GCATCTTCTGCTGCTGTTGAACTTAAGAATTTGGCTGAAGAAGTTACCAAGCTATCTGTA CAAAATGCTAAGCAGGCAAAAGAGTTACTAATTGCTCAGGAGTTGGCACACTCTAGGGTT CCTGGTAGAAAAGGCCGCTCAGCTGGCAGGGGCAGGGACGAGGTTGGAACTTGGAGTCTT GATTTAGAGGATATGAAGATGGAGCTACAGGCTAGAAAACAGAGGGAAGCTGCCCTAGAA GCTGCTTTGGCTGAGAAGGAGCATCTTGAAGAGGAGTACAAGAAAAAGTTTGATGAGGCA AAGAAAAAGGAACTATCTCTGGAAAACGATTTAGCAGGAATGTGGGTACTTGTTGCTAAG CTGAAGAGAGGGGCTTTAGGCATATCTGACTTGAATGTTGATGATCGATCTATTAATCTA GCTGACATTACTAACGGTACAAAGGAAAACAAAGCTGACAAAAATGTAGCTGTAGTTGAG AAACAACTTTCAGATAATACCGTGAAGTCATTGACTGCAGAGGAATACAGAAATCCAGAA TTTGAACCTCTTCTTGTTCGTCTCAAGGCTAAAATTCAAGAGATGAAGGAGAAGGAAACT GATTCCTTGGGTGACAAAGATGGAAATTCCCATGTCTGCAAAGTATGTTTTGAATCTGCC ACTGCTGCAGTTTTGCTTCCTTGTCGGCATTTTTGCTTGTGCAAGCCTTGCTCGCTTGCC TGTTCAGAATGCCCTCTATGCCGTACAAGAATCGCAGACAGGATAATTACCTTCACCTAA

Peptide Sequence

PEP ID	Os10t0512800-01
PEP Infomation	pep chromosome:IRGSP-1.0:10:19756786:19768053:-1 gene:Os10g0512800 transcript:Os10t0512800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein OsRFPHC-10, RING-HC protein 10, SKIP interacting protein 13, SKIPa-interacting protein 13, SKIPa-interacting protein 13 description:Similar to predicted protein. (Os10t0512800-01)
Sequence	MSSRPSSSASSRRSSSPFSAGSRRPPTSSSSSAGSYLTGRLMPRSYSTASSVSSSSHFFG GGGGSGGGSRSTTPGRRGSSSSSLVGPVPSPPSPVPFPSAEELVIEDTSRSGDSISVTIR FRPLSEREIQRGDEISWYADGERLVRCEYNPATAYGYDRVFGPKTTTEAVYDVAARPVVK GAMEGINGTVFAYGVTSSGKTHTMHGDQNCPGIIPLAIKDVFSLIQDTPGREFLLRVSYL EIYNEVINDLLDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNN FNLFSSRSHTIFTLMIESSAHGDEYDGVMYSQLNLIDLAGSESSKTETTGLRRREGSYIN KSLLTLGTVIGKLSEGRATHIPYRDSKLTRLLQSSLSGHGHVSLICTITPASSNMEETHN TLKFASRAKRVEIYAARNRMIDEKSLIKKYQREISSLKQELDQLRRGLIGGASQEEIMIL RQQLEEGQVKMQSRLEEEEEAKAALMSRIQRLTKLILVSTKNNIPALTDTSSHQRHNSVN EEDKVSTSQDSSMLVQNDSATKDSLSSASPDAVDEINQLRCASGDHSSIAGSGPDEMQGG ITASDQMDLLIEQVKMLAGEIAFGTSSLKRLIEQSIEDPEGTKNQIDNLEREIREKRRHM RALEQKLMESGEASVANASMMDMQQTITKLTAQCSEKAFELELRSADNRVLQEQLQQKNV EINELQEKVLRLEQQLTTNTEASPEQCTEHELHDLKSKLQLKEAESEKLKYEHMKITEEN RELVNQNSTLCEEVAYAKELASSAAVELKNLAEEVTKLSVQNAKQAKELLIAQELAHSRV PGRKGRSAGRGRDEVGTWSLDLEDMKMELQARKQREAALEAALAEKEHLEEEYKKKFDEA KKKELSLENDLAGMWVLVAKLKRGALGISDLNVDDRSINLADITNGTKENKADKNVAVVE KQLSDNTVKSLTAEEYRNPEFEPLLVRLKAKIQEMKEKETDSLGDKDGNSHVCKVCFESA TAAVLLPCRHFCLCKPCSLACSECPLCRTRIADRIITFT

Transcript Sequence

Transcript ID	Os10t0512800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:10:19756786:19768053:-1 gene:Os10g0512800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein OsRFPHC-10, RING-HC protein 10, SKIP interacting protein 13, SKIPa-interacting protein 13, SKIPa-interacting protein 13 description:Similar to predicted protein. (Os10t0512800-01)
Sequence	TTTTGGAGCAAGGCCATGTGAAGCCTCTGACCTTCCGATACCTTCCCCTCTTCCGCCGCG TCTCGCCTCCGCCTCCGCGCGCTCTCGCCGTCGAGCTCCCCCGCCGCGCCGCGTCGCGCC GCGCAGCGTCGCCTTGCGGGGGGGAGGTGGGGGGAGGGAAGCTTCGGTTTCCGTGCGGGA TGTCGTCGAGGCCGTCGTCGTCGGCGTCGTCGAGGCGGAGCAGCTCGCCGTTCTCGGCGG GGAGCAGGCGGCCTCCGACCTCGTCGTCGTCCTCCGCCGGCTCGTACCTCACGGGCCGCC TCATGCCGCGGTCGTACTCCACGGCGTCGTCCGTGTCCTCATCCTCCCATTTCTTCGGCG GCGGGGGTGGGAGCGGGGGAGGCTCGAGGTCCACCACCCCGGGGCGGAGGGGGAGCTCCT CCTCCTCCTTGGTGGGGCCGGTTCCGTCGCCGCCGTCGCCCGTGCCGTTCCCCAGCGCGG AGGAGCTCGTCATCGAGGACACCTCCCGATCCGGGGACAGCATATCCGTCACCATCCGCT TCCGGCCGCTCAGCGAGCGGGAGATCCAGCGCGGCGACGAGATCTCGTGGTATGCTGATG GGGAACGGCTTGTGCGCTGCGAGTACAACCCGGCGACGGCTTATGGTTACGATAGAGTTT TTGGTCCTAAAACAACTACTGAGGCTGTATATGATGTTGCTGCCCGGCCTGTTGTTAAAG GTGCCATGGAGGGTATAAATGGTACGGTTTTTGCTTATGGTGTCACAAGTAGTGGGAAGA CCCACACAATGCATGGTGATCAGAATTGCCCTGGAATAATCCCATTAGCCATCAAGGATG TATTCAGCTTAATTCAAGATACTCCTGGGAGGGAATTTTTGCTTCGTGTCTCATATCTGG AAATCTATAACGAGGTGATAAATGATCTACTTGATCCTACTGGCCAAAATCTGCGTGTGA GGGAAGATGCACAGGGAACATATGTAGAAGGCATAAAAGAAGAAGTTGTTTTATCTCCAG GGCATGCTCTTTCTTTTATTGCTGCCGGTGAAGAGCATCGGCATGTTGGTTCAAACAACT TCAACTTATTTAGCAGCCGAAGTCATACCATTTTCACATTGATGATTGAAAGCAGCGCTC ATGGTGACGAGTATGATGGAGTCATGTACTCACAACTTAATTTGATTGATCTAGCTGGGT CAGAGAGTTCTAAGACAGAGACTACAGGACTGAGAAGAAGGGAAGGATCATACATTAACA AGAGTCTTTTAACTCTGGGAACTGTTATTGGGAAACTCAGTGAAGGGAGAGCAACACATA TACCATACCGTGATTCTAAGTTGACTCGCCTGCTGCAGTCATCATTGAGTGGCCATGGCC ATGTTTCACTGATTTGCACAATCACCCCTGCATCGAGTAACATGGAGGAAACCCATAATA CATTGAAATTTGCAAGCAGAGCAAAACGTGTTGAAATTTATGCTGCTCGTAACCGGATGA TCGATGAGAAGTCTTTGATCAAGAAATATCAGAGAGAAATATCCTCTCTGAAGCAAGAGC TTGATCAGCTAAGGAGAGGATTGATTGGAGGTGCTAGTCAGGAAGAAATCATGATTTTAC GCCAACAGTTGGAGGAGGGCCAGGTAAAAATGCAATCTCGCCTGGAGGAGGAAGAGGAAG CAAAAGCTGCTCTGATGAGCAGAATACAACGCTTGACCAAGTTAATACTTGTTTCTACAA AGAACAATATTCCTGCCTTGACAGATACGTCTAGTCATCAGCGCCATAATTCGGTCAATG AGGAAGATAAAGTAAGCACATCACAAGATAGTTCTATGCTTGTCCAAAATGATAGTGCCA CGAAAGATTCGCTATCATCTGCTTCGCCAGATGCTGTGGATGAGATCAATCAACTAAGAT GTGCTAGTGGAGACCATTCTTCGATTGCTGGTTCTGGACCCGATGAAATGCAGGGAGGGA TCACCGCATCGGATCAAATGGATCTACTGATTGAGCAAGTGAAGATGCTTGCTGGTGAAA TTGCTTTTGGTACCAGTTCGCTGAAAAGACTGATTGAGCAATCTATTGAAGACCCTGAAG GGACGAAGAATCAAATAGATAATTTAGAGCGTGAAATCCGGGAGAAGAGAAGGCATATGC GAGCCCTGGAGCAAAAACTTATGGAAAGCGGTGAGGCATCAGTTGCTAATGCTTCCATGA TGGATATGCAACAGACGATTACCAAGCTGACAGCTCAGTGCAGTGAGAAGGCTTTTGAAT TAGAGTTAAGATCAGCTGATAATCGCGTCCTTCAGGAGCAGCTACAACAGAAGAATGTGG AAATCAATGAGTTACAAGAAAAAGTTCTACGCCTTGAGCAACAGCTGACAACAAATACTG AGGCATCCCCTGAACAATGCACAGAACATGAGCTTCATGATTTGAAATCTAAACTTCAGT TGAAGGAAGCAGAAAGTGAAAAGCTTAAATACGAGCACATGAAAATCACTGAGGAAAATC GTGAATTGGTCAACCAGAACAGCACATTATGTGAGGAAGTTGCCTATGCAAAAGAACTGG CATCTTCTGCTGCTGTTGAACTTAAGAATTTGGCTGAAGAAGTTACCAAGCTATCTGTAC AAAATGCTAAGCAGGCAAAAGAGTTACTAATTGCTCAGGAGTTGGCACACTCTAGGGTTC CTGGTAGAAAAGGCCGCTCAGCTGGCAGGGGCAGGGACGAGGTTGGAACTTGGAGTCTTG ATTTAGAGGATATGAAGATGGAGCTACAGGCTAGAAAACAGAGGGAAGCTGCCCTAGAAG CTGCTTTGGCTGAGAAGGAGCATCTTGAAGAGGAGTACAAGAAAAAGTTTGATGAGGCAA AGAAAAAGGAACTATCTCTGGAAAACGATTTAGCAGGAATGTGGGTACTTGTTGCTAAGC TGAAGAGAGGGGCTTTAGGCATATCTGACTTGAATGTTGATGATCGATCTATTAATCTAG CTGACATTACTAACGGTACAAAGGAAAACAAAGCTGACAAAAATGTAGCTGTAGTTGAGA AACAACTTTCAGATAATACCGTGAAGTCATTGACTGCAGAGGAATACAGAAATCCAGAAT TTGAACCTCTTCTTGTTCGTCTCAAGGCTAAAATTCAAGAGATGAAGGAGAAGGAAACTG ATTCCTTGGGTGACAAAGATGGAAATTCCCATGTCTGCAAAGTATGTTTTGAATCTGCCA CTGCTGCAGTTTTGCTTCCTTGTCGGCATTTTTGCTTGTGCAAGCCTTGCTCGCTTGCCT GTTCAGAATGCCCTCTATGCCGTACAAGAATCGCAGACAGGATAATTACCTTCACCTAAA GTGCATGTTATCTTAAAAGGTAACTTGAAGCACCCAATCTCTTCTTGTAAAATCATCAGT GGTATATGATTCTTTTTTCCCCTAGCAAAGAAGGTGCCTTTTTATGTTCCTTCTGTGTTT GTATCCCAATTCTTTTTTTTTTTGGTTTGCTCTATAGCTTTCCCAGTTCAACCTGTTCTT TGTTGTACGAGAAGTTACAAGATATAACTTCTCTGCAAATATGTATAGATATGCGACTCG ACAGTATAATACATTTGCTTTTTTTTTTCTCCTTTGGCTTTTGGGAAGTAAAGCAACCAA AGAACATGAGATCCAAGAGAC