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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0509200-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:19561807:19568655:1 gene:Os10g0509200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to plastid-lipid associated protein PAP / fibrillin family protein. (Os10t0509200-01)
Sequence

ATGGCGCTCGCCGCTGCTCCCCTGCTCCGCCTCCCGATCTCCCCACCCTCCCCACCGCCG
GCGCAGACGCCGCCGCCTCTCCTGGCGTGTAACTCCGTCAACGGCGTCCGCCTTCGCCCT
CAGCGCAGCAGGCAACCGCGCCGCGCCGCCGCGGCGGCGGCAACGGCTTCGCTGGCGGCG
GACACGGAGCGGCGGAAGCACGAGCTGCTGCGGGCGGTGCAGGAGACGGGGAGGGGATTC
GCGGCGAGCCCCGACCAGCGCGCGTCCATCGAGGAGGCCATCGTGAGCGTGGAGGAGCTC
GGCGCCGGGGAGGGGTCGCCGCTGGACCTCGCGGCGCTCGACGGCACGTGGAGGCTGTGC
TACACCTCGGCGTCGGACGTGCGCGTGCTGTTCGAGGCCGCCGAGAGGCTCCCCCTCCTG
CAGGTGGGGCAAATATACCAGAAATTCGAATGCAAGGATAGGTCAGATGGTGGGGTTGTG
CGGAATGTTGTGCGATGGAGCATTGAGAACTTGCTGGAGGAGCAAGAGGGTGCAACACTG
ATGGTCTCTGCAAAATTTGCTGTCATGTCTAAGCGCAACATCTTCCTTCAATTTGAGGAG
GTTGTTGTAGAAAATATCAAGATTAGTGAGCAGCTACAAGCACTAATAGCTCCTGCTATA
CTCCCTCGGTCATTTTTTAGTCTTCAGATATTGCAGTTCCTTAAAACTTTTCGAGCTCAA
GTTCCTGTTAATGGCCCTGAAAGGAGATCACCCGGAGGACTATATTATCTTTCTTACCTT
GACCGCGATATGCTCCTGGGGCGATCGGTTGGTGGTGGAGGAGTTTTTATTTTCACAAGA
GCACAGCCTCTTTTGTGA

Peptide Sequence

PEP ID

Os10t0509200-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:19561807:19568655:1 gene:Os10g0509200 transcript:Os10t0509200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to plastid-lipid associated protein PAP / fibrillin family protein. (Os10t0509200-01)
Sequence

MALAAAPLLRLPISPPSPPPAQTPPPLLACNSVNGVRLRPQRSRQPRRAAAAAATASLAA
DTERRKHELLRAVQETGRGFAASPDQRASIEEAIVSVEELGAGEGSPLDLAALDGTWRLC
YTSASDVRVLFEAAERLPLLQVGQIYQKFECKDRSDGGVVRNVVRWSIENLLEEQEGATL
MVSAKFAVMSKRNIFLQFEEVVVENIKISEQLQALIAPAILPRSFFSLQILQFLKTFRAQ
VPVNGPERRSPGGLYYLSYLDRDMLLGRSVGGGGVFIFTRAQPLL

Transcript Sequence

Transcript ID

Os10t0509200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:19561807:19568655:1 gene:Os10g0509200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to plastid-lipid associated protein PAP / fibrillin family protein. (Os10t0509200-01)
Sequence

GGCCATCCACTCGACTCCACCCTGAAATGGCGCTCGCCGCTGCTCCCCTGCTCCGCCTCC
CGATCTCCCCACCCTCCCCACCGCCGGCGCAGACGCCGCCGCCTCTCCTGGCGTGTAACT
CCGTCAACGGCGTCCGCCTTCGCCCTCAGCGCAGCAGGCAACCGCGCCGCGCCGCCGCGG
CGGCGGCAACGGCTTCGCTGGCGGCGGACACGGAGCGGCGGAAGCACGAGCTGCTGCGGG
CGGTGCAGGAGACGGGGAGGGGATTCGCGGCGAGCCCCGACCAGCGCGCGTCCATCGAGG
AGGCCATCGTGAGCGTGGAGGAGCTCGGCGCCGGGGAGGGGTCGCCGCTGGACCTCGCGG
CGCTCGACGGCACGTGGAGGCTGTGCTACACCTCGGCGTCGGACGTGCGCGTGCTGTTCG
AGGCCGCCGAGAGGCTCCCCCTCCTGCAGGTGGGGCAAATATACCAGAAATTCGAATGCA
AGGATAGGTCAGATGGTGGGGTTGTGCGGAATGTTGTGCGATGGAGCATTGAGAACTTGC
TGGAGGAGCAAGAGGGTGCAACACTGATGGTCTCTGCAAAATTTGCTGTCATGTCTAAGC
GCAACATCTTCCTTCAATTTGAGGAGGTTGTTGTAGAAAATATCAAGATTAGTGAGCAGC
TACAAGCACTAATAGCTCCTGCTATACTCCCTCGGTCATTTTTTAGTCTTCAGATATTGC
AGTTCCTTAAAACTTTTCGAGCTCAAGTTCCTGTTAATGGCCCTGAAAGGAGATCACCCG
GAGGACTATATTATCTTTCTTACCTTGACCGCGATATGCTCCTGGGGCGATCGGTTGGTG
GTGGAGGAGTTTTTATTTTCACAAGAGCACAGCCTCTTTTGTGATGATTTCAGAATTACC
AGGAGTATACCATTTGAAGGCGGCAATTGAACCCATGCAAGAGGTTGATGTGATGGAAAA
GGACTGAAGTTTAGTTCTAAACACAGCCTCTGAAAGTAGATGAACTCTTGATGGCGTTTT
TGTGGTTACCCTGAGAGCTCGTTATAGTTTAACTCAATTCTGTCTCTGAAAGACTTTCGG
TTGCTTAATTCGTTAAGCCCTGTTCCAGTTTTCTCTGAAAATACTGGTCTTGAGTTCACT
CTGCCCAAAACAAACCAAGTCTTGAGTTCATGTCAACAGGGACACAGGGTCAATTCAAAA
GACTG