Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os10t0494800-01
CDS Infomation	cds chromosome:IRGSP-1.0:10:18798798:18805869:-1 gene:Os10g0494800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:katanin P80a, Katanin regulatory subunit P80a description:Similar to Katanin p80 WD40-containing subunit B1 (Katanin p80 subunit B1) (p80 katanin). (Os10t0494800-01)
Sequence	ATGGCCACCAAGCGCGCGTACAAGCTCCAGGAGTTTGTTGCGCATGCTTCCGATGTCAAC TGTGTCAAGTTTGGGAGGAAGACATCAAGAATCCTCATCACTGGTGGGGAGGACCAAAAG GTCAATCTTTGGGCCATAGGGAAACCCAGTTCCATCTTGAGCCTGTCAGGCCTTACGAGT CCAGTTGAGTCAGTGAGCTTTGACTCATCTGAAGCTATGATAGGTGCTGGAGCATCAAGT GGGACAATAAAGATATGGGATGTAGATGAAGCAAAAGTCGTTCGTACTTTTACTGGACAT AGATCGAGTTGTGCGTCCCTTGATTTCCATCCTTTTGGAGAATTCTTCGCTTCTGGGTCT TCAGACACTAACATGAAAATATGGGATATGCGGAAAAAGGGATGCATTCACACATATAAA GGTCACACACGGCGGATTGATGTGCTTAGATTCACTCCTGATGGCCGGTGGATTGTCTCT GGTGGATCTGATAACTCTGTAAAGATCTGGGATTTGACAGCTGGAAAGCTCTTGCATGAC TTTAGGAATCATGAAGGCCCAATTAACTGCTTAGATTTTCACCCCCATGAGTTCTTATTG GCTACAGGTTCAGCTGATAAGACAGTTAAGTTTTGGGACCTTGAAACTTTTGAGTTGATT GGTTCTTCTGGACCTGAGAATAGCCGGGAATACTTTGTGCCAGCTAGTGTAGTTCGGTCT ATGACATTCAACAAAGATGGTAAATCACTTTTTTGCGGATTACATGAAAGTTTGAAGGTT CTTTCCTGGGAACCCATCATATGCCATGATGTGGTTGATGTTGGCTGGTCCACATTAGGG GATCTAATTGTTCATGAGGGAAAACTTCTTGGTTGCTCATATAACCAAAGTTGTGCTGGA ATATGGGTCGTGGACTTGATGAAAATTGAACCGTATGCTGTTAGCATTGCTGAAGCACAT TTGAATGAAAGCGTAAATAGGTCAATACAGGCTGATAATAGCATATCATCAGTGTTGGGA AGGTTATCAGTTTCCAGAAGCCCAGCCAAGGAAGCATCTTCCGATACTTTGCTTAAACTC TCAATGTCTGCTTCAAAAGAAGTTCCTGTTCCAGCTTCTTCTGCAGTGACAAAGAAACTA CCAAAAGAACCTATAACAAGCAATATTCGGCTCACAAGATCTGATTCTCTACCAGTTGTT TCTCCTAGGGTTAGATTGAACCCAAAGTTCTCTGATGACCAGAAGAGGCAGACAGATTAT GCTGTGCCTATAACAACTCCAAGAATTCGCTCCAAAGTGGATCTCTCTATAGGTGCTAGA GCATTCCATCGTAACTCAGTACCATCGGTTGCTCCCACAAATAGATCCAGGTCCAAAATA TCTGCATATAGTAGTGAAGGATCGTCGTTCATCCCTGTTGTTGTCCCTAGGCATATCCCT AAAGTGGATTCTGGTCCCAATCTCAGTAAAGTTCTCACTACTGATTTAACAATTGTCGAG CCTCAAGACATAGAACGAGGTGGTCTGGCTGTGGATTGTGGAGAAGATGATAAATTGGTG TGTGTGATTGATTCAAGGAGCTCAAATATGGGTGTACAAAATGGCCGTAGAAGAAAAGCC GGTGATATTATTACACATAAAGAAACCCCAGAGACTGCTTTGACAGTTAATATGGATCGT GACTTCAGAAGAAAGGCTCCTGAAACTGAAAGTATGCAACAGGACATATTTCATTCAGAG CCCATTAGTTCAAAATGTAAATATATTAAAGAAACTTCAGGTGCTGGAGACATTAACTTG TCTGGGTCAGCCATTACTGAAAGTGTCAAGTCTAATGAAGGTGGTGACTGGTATAATGCA TCTTCTTTTGTAAAACCAAATTTGACTGTTGGAAGGAATCCAGAGACTTCATACATCAAC AGAAGAACAATGTTTGGATTGAGACATTCAACGGATTCAAGTGAAAAACACGCTGTTGAA CATGGGCCTTCCAATTTGTCTGCAAGTTATGAGAGAAATCAGTATGCACCAACACTACAT AACTTGAGGAGGCGCTCTTCGGTTGCTAGAGAACAGAGTGCATCAGCTGGTGATGAAGAT GATATTGCTGATCTGATGGAAAACCATCAAGAATTCATTCATGCAGTGAAGTCTCGGCTA ACAAAACTAGAGGTGGTTTACAGGTGTTGGCACAATAACGATGTAAAGGGATCTATTGAT GCTACACGCAGGATTCAGGATCTTGATGTTACCGCCGATATAATTAGTGTTCTGATGGAG AATGATAATTCTATCACACTAGATATTTGTACTTGTGTCTTACCTCTTGCCTCCAGTGTT CTTGAAAAAAGCAGCTATGACAGGCACCTGAAAGTTGCCTTGGAGATGATCCTTAAGCTT GTGAAAAGCTTTGGTTCTACAATATCTTCAGCTGTGTCATCTACTCCACCAGTTGGTGTA GACATTGAGGCAGAACAGAGGCTCAATCGGTGCAATTTGTGCTTTCTAGAGCTGATAAAA GTTCACAGCGTTCTCTTTGCCCTGACACGGCGGCAAGGCGAGGTTGGAAGATCTGCACAG GAGCTAAGCCTCTTTCTTCAGGATATCTTTCAGCTGACAAGCAGATAG

Peptide Sequence

PEP ID	Os10t0494800-01
PEP Infomation	pep chromosome:IRGSP-1.0:10:18798798:18805869:-1 gene:Os10g0494800 transcript:Os10t0494800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:katanin P80a, Katanin regulatory subunit P80a description:Similar to Katanin p80 WD40-containing subunit B1 (Katanin p80 subunit B1) (p80 katanin). (Os10t0494800-01)
Sequence	MATKRAYKLQEFVAHASDVNCVKFGRKTSRILITGGEDQKVNLWAIGKPSSILSLSGLTS PVESVSFDSSEAMIGAGASSGTIKIWDVDEAKVVRTFTGHRSSCASLDFHPFGEFFASGS SDTNMKIWDMRKKGCIHTYKGHTRRIDVLRFTPDGRWIVSGGSDNSVKIWDLTAGKLLHD FRNHEGPINCLDFHPHEFLLATGSADKTVKFWDLETFELIGSSGPENSREYFVPASVVRS MTFNKDGKSLFCGLHESLKVLSWEPIICHDVVDVGWSTLGDLIVHEGKLLGCSYNQSCAG IWVVDLMKIEPYAVSIAEAHLNESVNRSIQADNSISSVLGRLSVSRSPAKEASSDTLLKL SMSASKEVPVPASSAVTKKLPKEPITSNIRLTRSDSLPVVSPRVRLNPKFSDDQKRQTDY AVPITTPRIRSKVDLSIGARAFHRNSVPSVAPTNRSRSKISAYSSEGSSFIPVVVPRHIP KVDSGPNLSKVLTTDLTIVEPQDIERGGLAVDCGEDDKLVCVIDSRSSNMGVQNGRRRKA GDIITHKETPETALTVNMDRDFRRKAPETESMQQDIFHSEPISSKCKYIKETSGAGDINL SGSAITESVKSNEGGDWYNASSFVKPNLTVGRNPETSYINRRTMFGLRHSTDSSEKHAVE HGPSNLSASYERNQYAPTLHNLRRRSSVAREQSASAGDEDDIADLMENHQEFIHAVKSRL TKLEVVYRCWHNNDVKGSIDATRRIQDLDVTADIISVLMENDNSITLDICTCVLPLASSV LEKSSYDRHLKVALEMILKLVKSFGSTISSAVSSTPPVGVDIEAEQRLNRCNLCFLELIK VHSVLFALTRRQGEVGRSAQELSLFLQDIFQLTSR

Transcript Sequence

Transcript ID	Os10t0494800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:10:18798798:18805869:-1 gene:Os10g0494800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:katanin P80a, Katanin regulatory subunit P80a description:Similar to Katanin p80 WD40-containing subunit B1 (Katanin p80 subunit B1) (p80 katanin). (Os10t0494800-01)
Sequence	ATCGAAGCTTTTCATGACTGCAGCCATCGCCGCAGATGGCCACCAAGCGCGCGTACAAGC TCCAGGAGTTTGTTGCGCATGCTTCCGATGTCAACTGTGTCAAGTTTGGGAGGAAGACAT CAAGAATCCTCATCACTGGTGGGGAGGACCAAAAGGTCAATCTTTGGGCCATAGGGAAAC CCAGTTCCATCTTGAGCCTGTCAGGCCTTACGAGTCCAGTTGAGTCAGTGAGCTTTGACT CATCTGAAGCTATGATAGGTGCTGGAGCATCAAGTGGGACAATAAAGATATGGGATGTAG ATGAAGCAAAAGTCGTTCGTACTTTTACTGGACATAGATCGAGTTGTGCGTCCCTTGATT TCCATCCTTTTGGAGAATTCTTCGCTTCTGGGTCTTCAGACACTAACATGAAAATATGGG ATATGCGGAAAAAGGGATGCATTCACACATATAAAGGTCACACACGGCGGATTGATGTGC TTAGATTCACTCCTGATGGCCGGTGGATTGTCTCTGGTGGATCTGATAACTCTGTAAAGA TCTGGGATTTGACAGCTGGAAAGCTCTTGCATGACTTTAGGAATCATGAAGGCCCAATTA ACTGCTTAGATTTTCACCCCCATGAGTTCTTATTGGCTACAGGTTCAGCTGATAAGACAG TTAAGTTTTGGGACCTTGAAACTTTTGAGTTGATTGGTTCTTCTGGACCTGAGAATAGCC GGGAATACTTTGTGCCAGCTAGTGTAGTTCGGTCTATGACATTCAACAAAGATGGTAAAT CACTTTTTTGCGGATTACATGAAAGTTTGAAGGTTCTTTCCTGGGAACCCATCATATGCC ATGATGTGGTTGATGTTGGCTGGTCCACATTAGGGGATCTAATTGTTCATGAGGGAAAAC TTCTTGGTTGCTCATATAACCAAAGTTGTGCTGGAATATGGGTCGTGGACTTGATGAAAA TTGAACCGTATGCTGTTAGCATTGCTGAAGCACATTTGAATGAAAGCGTAAATAGGTCAA TACAGGCTGATAATAGCATATCATCAGTGTTGGGAAGGTTATCAGTTTCCAGAAGCCCAG CCAAGGAAGCATCTTCCGATACTTTGCTTAAACTCTCAATGTCTGCTTCAAAAGAAGTTC CTGTTCCAGCTTCTTCTGCAGTGACAAAGAAACTACCAAAAGAACCTATAACAAGCAATA TTCGGCTCACAAGATCTGATTCTCTACCAGTTGTTTCTCCTAGGGTTAGATTGAACCCAA AGTTCTCTGATGACCAGAAGAGGCAGACAGATTATGCTGTGCCTATAACAACTCCAAGAA TTCGCTCCAAAGTGGATCTCTCTATAGGTGCTAGAGCATTCCATCGTAACTCAGTACCAT CGGTTGCTCCCACAAATAGATCCAGGTCCAAAATATCTGCATATAGTAGTGAAGGATCGT CGTTCATCCCTGTTGTTGTCCCTAGGCATATCCCTAAAGTGGATTCTGGTCCCAATCTCA GTAAAGTTCTCACTACTGATTTAACAATTGTCGAGCCTCAAGACATAGAACGAGGTGGTC TGGCTGTGGATTGTGGAGAAGATGATAAATTGGTGTGTGTGATTGATTCAAGGAGCTCAA ATATGGGTGTACAAAATGGCCGTAGAAGAAAAGCCGGTGATATTATTACACATAAAGAAA CCCCAGAGACTGCTTTGACAGTTAATATGGATCGTGACTTCAGAAGAAAGGCTCCTGAAA CTGAAAGTATGCAACAGGACATATTTCATTCAGAGCCCATTAGTTCAAAATGTAAATATA TTAAAGAAACTTCAGGTGCTGGAGACATTAACTTGTCTGGGTCAGCCATTACTGAAAGTG TCAAGTCTAATGAAGGTGGTGACTGGTATAATGCATCTTCTTTTGTAAAACCAAATTTGA CTGTTGGAAGGAATCCAGAGACTTCATACATCAACAGAAGAACAATGTTTGGATTGAGAC ATTCAACGGATTCAAGTGAAAAACACGCTGTTGAACATGGGCCTTCCAATTTGTCTGCAA GTTATGAGAGAAATCAGTATGCACCAACACTACATAACTTGAGGAGGCGCTCTTCGGTTG CTAGAGAACAGAGTGCATCAGCTGGTGATGAAGATGATATTGCTGATCTGATGGAAAACC ATCAAGAATTCATTCATGCAGTGAAGTCTCGGCTAACAAAACTAGAGGTGGTTTACAGGT GTTGGCACAATAACGATGTAAAGGGATCTATTGATGCTACACGCAGGATTCAGGATCTTG ATGTTACCGCCGATATAATTAGTGTTCTGATGGAGAATGATAATTCTATCACACTAGATA TTTGTACTTGTGTCTTACCTCTTGCCTCCAGTGTTCTTGAAAAAAGCAGCTATGACAGGC ACCTGAAAGTTGCCTTGGAGATGATCCTTAAGCTTGTGAAAAGCTTTGGTTCTACAATAT CTTCAGCTGTGTCATCTACTCCACCAGTTGGTGTAGACATTGAGGCAGAACAGAGGCTCA ATCGGTGCAATTTGTGCTTTCTAGAGCTGATAAAAGTTCACAGCGTTCTCTTTGCCCTGA CACGGCGGCAAGGCGAGGTTGGAAGATCTGCACAGGAGCTAAGCCTCTTTCTTCAGGATA TCTTTCAGCTGACAAGCAGATAGATGATATGATAGCCATACGGCGATATTTCGCCCAAAT ACTCATCTTTTTTCCTTGGAACAGATAGACAGCTATAGAGAAAGATATAGATAGGAAACA TACAGGTCATCCTTGGCAAATGTACAGCAAATTCTTGTACCATCCGGTTTGCAATCAAAT ACTAGTCAACAAAAATTCAAAAATCTCTGC