Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0492900-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:18707782:18710608:1 gene:Os10g0492900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to alpha-galactosidase. (Os10t0492900-01)
Sequence

ATGGCGGCGGCGGCGGCGGTGCTGCTTGCGGTGGCGTGCGCCGCGGCGGCGATGATCGCC
GGCGGCGAGTGCGGGAGGGTGGTGCACGTGGGGGAGGAGCACCGGAGGAGCATGCTCGCC
AATGGCCTCGCCACGGCTCCTCCCATGGGCTGGAACAGCTGGAATCACTTCGCCTGCGAC
GGCAACGGAGAAGACGTCATCAGGGAGACTGCTGATGCACTTGTGTCAACCGGGCTTGCA
GCTGCTGGCTACAAATACGTCAACATCGATGATTGCTGGGCAGAGCCACAACGTGATTCG
AAGGGTAATCTTGTGGCCAACAAAAAGACATTCCCCCACGGGATCAAGGCGCTCGCCGAT
TATGTTCACAGCAAGGGGCTCAAGCTAGGCATTTACTCCGATGCAGGATTCAAGACGTGT
GCGAAGGTTCAGCCGGGGTCTCTCGGCCACGAGGAGCAGGACGCCAAGACATTCGCATCG
TGGGGAGTGGACTACCTCAAGTATGATAACTGCAACAATGGCGACCTGAAGCCACTGGAG
AGGTACCCGGAGATGAGCAAGGCTCTGATGATGGCCGGCCGGCCGATCTACTTCTCGCTG
TGCGAATGGGGCGACATGCACCCGGCGAAGTGGGGCGCGGCGTACGGCAACAGCTGGAGA
ACCACCAACGACATCGCGGACACCTGGGAGAGCATGGTGTCGAGGGCGGATGAGAACGAG
GTGTGGGCGGACTACGCGCGACCTGGCGGCTGGAACGACCCGGACATGCTGGAGGTTGGC
AATGGCGGGATGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAG
GTACTACCAAATGTGACGGATGTCGGATAA

Peptide Sequence

PEP ID

Os10t0492900-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:18707782:18710608:1 gene:Os10g0492900 transcript:Os10t0492900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to alpha-galactosidase. (Os10t0492900-01)
Sequence

MAAAAAVLLAVACAAAAMIAGGECGRVVHVGEEHRRSMLANGLATAPPMGWNSWNHFACD
GNGEDVIRETADALVSTGLAAAGYKYVNIDDCWAEPQRDSKGNLVANKKTFPHGIKALAD
YVHSKGLKLGIYSDAGFKTCAKVQPGSLGHEEQDAKTFASWGVDYLKYDNCNNGDLKPLE
RYPEMSKALMMAGRPIYFSLCEWGDMHPAKWGAAYGNSWRTTNDIADTWESMVSRADENE
VWADYARPGGWNDPDMLEVGNGGMTNDEYIVHFSLWAISKVLPNVTDVG

Transcript Sequence

Transcript ID

Os10t0492900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:18707782:18710608:1 gene:Os10g0492900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to alpha-galactosidase. (Os10t0492900-01)
Sequence

GCCGGCGAGCTGTGCCGTTCTTGATCACCGAGGCGATGGCGGCGGCGGCGGCGGTGCTGC
TTGCGGTGGCGTGCGCCGCGGCGGCGATGATCGCCGGCGGCGAGTGCGGGAGGGTGGTGC
ACGTGGGGGAGGAGCACCGGAGGAGCATGCTCGCCAATGGCCTCGCCACGGCTCCTCCCA
TGGGCTGGAACAGCTGGAATCACTTCGCCTGCGACGGCAACGGAGAAGACGTCATCAGGG
AGACTGCTGATGCACTTGTGTCAACCGGGCTTGCAGCTGCTGGCTACAAATACGTCAACA
TCGATGATTGCTGGGCAGAGCCACAACGTGATTCGAAGGGTAATCTTGTGGCCAACAAAA
AGACATTCCCCCACGGGATCAAGGCGCTCGCCGATTATGTTCACAGCAAGGGGCTCAAGC
TAGGCATTTACTCCGATGCAGGATTCAAGACGTGTGCGAAGGTTCAGCCGGGGTCTCTCG
GCCACGAGGAGCAGGACGCCAAGACATTCGCATCGTGGGGAGTGGACTACCTCAAGTATG
ATAACTGCAACAATGGCGACCTGAAGCCACTGGAGAGGTACCCGGAGATGAGCAAGGCTC
TGATGATGGCCGGCCGGCCGATCTACTTCTCGCTGTGCGAATGGGGCGACATGCACCCGG
CGAAGTGGGGCGCGGCGTACGGCAACAGCTGGAGAACCACCAACGACATCGCGGACACCT
GGGAGAGCATGGTGTCGAGGGCGGATGAGAACGAGGTGTGGGCGGACTACGCGCGACCTG
GCGGCTGGAACGACCCGGACATGCTGGAGGTTGGCAATGGCGGGATGACCAACGACGAGT
ACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAGGTACTACCAAATGTGACGGATGTCG
GATAATGATGGTATTCGTTTCTACTAAAGATGACGATGAAAATAGTGTAAAGAAAAAAAG
AAAGTTATCATCGGTTAGC