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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0490100-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:18598558:18599387:1 gene:Os10g0490100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Virulence factor, pectin lyase fold family protein. (Os10t0490100-01)
Sequence

ATGGCGGGTGCCATGACCATGAGTCGCCGCCGTCTCTCCCACGCGCTCCTCCTCGTGCTC
GCGATCCTCCCCAACCTGGCCGCTCTCGCCGTCGCCGCCGGCGGCGGCAGCGGAGGCGGT
GGCTTCTTCCCGCACCGGTCCCTCCTCCAGTCCTCCAGCTGCCAGCCGAGCGGCGCCATC
ACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCCGAGTGCTGCCAGGACGGCGTC
CAGTACATGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGGCACCGGCACCGCGGCC
CTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCGGCGCGCCGTCCTGCACG
GGGAGGTTCTACGACGACGGCCAGCTGGTGGTGGCGCTGTCCACGGGGTGGTTCGACGGG
AGGAGCCGGTGCGAGAAGGACGTCGTCATCCGGGCGAGCGGCGGCGCGTCCGTGACGGCC
ATGGTCGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACAGCGACCACAACTTCGAGCCG
CCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGTGTGGGACGCGCTGGGGCTCAAC
AAGGACGACGGCGAGGCCCAGATCACCTGGTCCGATGCTTGA

Peptide Sequence

PEP ID

Os10t0490100-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:18598558:18599387:1 gene:Os10g0490100 transcript:Os10t0490100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Virulence factor, pectin lyase fold family protein. (Os10t0490100-01)
Sequence

MAGAMTMSRRRLSHALLLVLAILPNLAALAVAAGGGSGGGGFFPHRSLLQSSSCQPSGAI
TGTSGDCNADNGSECCQDGVQYMTYACSPPVAAGGTGTAALLTLNSFADGGDGGGAPSCT
GRFYDDGQLVVALSTGWFDGRSRCEKDVVIRASGGASVTAMVVDECDSQRGCDSDHNFEP
PCRNNIVDGSPAVWDALGLNKDDGEAQITWSDA

Transcript Sequence

Transcript ID

Os10t0490100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:18598558:18599387:1 gene:Os10g0490100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Virulence factor, pectin lyase fold family protein. (Os10t0490100-01)
Sequence

ACACTAGCACAGCGCAAGAAAATGGCGGGTGCCATGACCATGAGTCGCCGCCGTCTCTCC
CACGCGCTCCTCCTCGTGCTCGCGATCCTCCCCAACCTGGCCGCTCTCGCCGTCGCCGCC
GGCGGCGGCAGCGGAGGCGGTGGCTTCTTCCCGCACCGGTCCCTCCTCCAGTCCTCCAGC
TGCCAGCCGAGCGGCGCCATCACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCC
GAGTGCTGCCAGGACGGCGTCCAGTACATGACGTACGCCTGCTCGCCGCCCGTCGCCGCC
GGCGGCACCGGCACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGC
GGCGGCGCGCCGTCCTGCACGGGGAGGTTCTACGACGACGGCCAGCTGGTGGTGGCGCTG
TCCACGGGGTGGTTCGACGGGAGGAGCCGGTGCGAGAAGGACGTCGTCATCCGGGCGAGC
GGCGGCGCGTCCGTGACGGCCATGGTCGTCGACGAGTGCGACTCCCAGCGCGGCTGCGAC
AGCGACCACAACTTCGAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGTG
TGGGACGCGCTGGGGCTCAACAAGGACGACGGCGAGGCCCAGATCACCTGGTCCGATGCT
TGACGACGACGACGACACACGTAGTGACGTAGACGCCATGTAACACGGCCGTATAATTTC
CCATTAATAAGCTTATATATATTCCCTAACAGTGATGTATCGTAATTTTTCTTTTGTAAA
ATTAAACACCTCTTGATATATCAAGTAATAAAGAGGGAATACTAAATTAT