Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os10t0489900-01
CDS Infomation	cds chromosome:IRGSP-1.0:10:18591175:18595632:1 gene:Os10g0489900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to CDT1a protein. (Os10t0489900-01)
Sequence	ATGACCGAGGGGAAAAATACTCAGCTTGACCTTGAGACAGAAGGTTCAAGTAGCCCTGCA GCAACACAGAAGATGAAAGTCAAAATGGAAGATTCTGAAAGCAAAATTGAATCCCCCACA CTGGAGAAGTCTGAATCTAGAAGGAATGGGGTCGTTATCAGTTCACTTGCAAGAAATTTG CTTGCAGAGAGGTACAAGGACAGATTTGCTGCTCAGTTGTTGGGGGATGAGGATGAAGAC GAAACTGATGATGAAGATGATAGCAGCAGTACTTCGCCAGATGGTAGTAGTCCATCTGTT TCAGAAAGTATTGATATCTCTGGCACATCTCCAAAGGATAGATCAAATGATCTTCTCGAG AAGCACAATAATTTGCTAAATCTATTCAATCGAATGATGAGTTCTATAAGGTTGCTGCAC CTACGGAAGAAGATGACTACATTTAAGAACATTGCCACCCAGGTGGAAATACTCACAAAG AGGGAGTTCTTATATACACATTTAGCCCAAATGAAGCATTTATTTCCAGAAGCAATCCAG ATAAAGAAAATACTTTTGCATGACGAGAAAAGCCTATGCATGTATGCTGACATGGAAATT ACAATTCTAATGGATACCGTAGAAAGTAGTAGTCCTGATCAGTCCCTGTCCATGGCAATA TGCGAGGCTTTTCACTCAAAGCTTTTGAGTTTTTTGGATGCTCATCATAAGGATATTGAT ATTCCTGAGGCCATGCTACCAGAGCCCTTCAATTCAAGGGATAAGCTGCATCTCAAGGCA CCACTTGATGGACATTCTGCTGAGCCACTTCTACAGAGTTCTAACAGAAATGAACTTTTG AATGCTTCACACTTCCCATGTTCTTTTCAAAAGCTTATGTCCCAGAAAATTATTGCTGAT GGAACAGATAGGACTAAGTTGCTTTCTGATCCGGCAGAACTCAGTATGCTGAGTGCTGAT GATACAGAAGGGCCCAAGAGAAGCTCTAACAAGCAAGACCAGCATGCTTCGATTCCATTC AAGACTGATATTTCTTCTACTCCAAACCGCCATTTGATCTCCAGCTGTCAAGGGAGTACA CCAAAGCAAGGGACTTTATTACATTCACCCCTGATGGCTGAAACACCAGCAATGCAGACA CCAAGAAGGCCATTGCCCACTCAGATTGAGAAACTTGAAACCACTAGTGGACAAACTTCT GAAGCACGATCTGCCAGTTCAGCTCGCAGGTCACTAAAAATGTTTTCACCATCAAAAATT CAGGAATGCTCTTCTGATCATGATGGGGCCATCCTTACCCTGGAACATGAGGTTACAGCT GGCAAATGCCTTTTCCCAGATGAAACTCACAATTTTACTAACTCACTGGAGGAAAACAAT CCTGCCATTTGCTTTGCTGATGTAGACAAAACCAAAGAAGTCGACCCAGCAGAATCCCAG GAAAAGATAGCTTCTTTACAACTCACATTCGACATAGTCTGCGATATTTCTCGGTCTACC AAGAATTCACTTATTACAAAACAGGAACTTTTTCACAATATTCTTGCTAACAACTTGGAG ATAGAAGAGACAGGGGAGATAGAAGAACAGCTGCATATTTTGGAGGACCTGTCTCCTGAT TGGATATCTAAGAAGGTGATACCTGGTGGAGATATTCTTTACAGCATTAAAGAAATAGCA GATCAGAAATCAGTTCGTGCAAGACTCGTAGAAGTCATATGA

Peptide Sequence

PEP ID	Os10t0489900-01
PEP Infomation	pep chromosome:IRGSP-1.0:10:18591175:18595632:1 gene:Os10g0489900 transcript:Os10t0489900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to CDT1a protein. (Os10t0489900-01)
Sequence	MTEGKNTQLDLETEGSSSPAATQKMKVKMEDSESKIESPTLEKSESRRNGVVISSLARNL LAERYKDRFAAQLLGDEDEDETDDEDDSSSTSPDGSSPSVSESIDISGTSPKDRSNDLLE KHNNLLNLFNRMMSSIRLLHLRKKMTTFKNIATQVEILTKREFLYTHLAQMKHLFPEAIQ IKKILLHDEKSLCMYADMEITILMDTVESSSPDQSLSMAICEAFHSKLLSFLDAHHKDID IPEAMLPEPFNSRDKLHLKAPLDGHSAEPLLQSSNRNELLNASHFPCSFQKLMSQKIIAD GTDRTKLLSDPAELSMLSADDTEGPKRSSNKQDQHASIPFKTDISSTPNRHLISSCQGST PKQGTLLHSPLMAETPAMQTPRRPLPTQIEKLETTSGQTSEARSASSARRSLKMFSPSKI QECSSDHDGAILTLEHEVTAGKCLFPDETHNFTNSLEENNPAICFADVDKTKEVDPAESQ EKIASLQLTFDIVCDISRSTKNSLITKQELFHNILANNLEIEETGEIEEQLHILEDLSPD WISKKVIPGGDILYSIKEIADQKSVRARLVEVI

Transcript Sequence

Transcript ID	Os10t0489900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:10:18591175:18595632:1 gene:Os10g0489900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to CDT1a protein. (Os10t0489900-01)
Sequence	AACGTGGCTTCTCTCTCTCTCTCTCTCCATCGCTTCGTTTTTTGGATTTCGGCGGCGCGT CGTCTCGCTCTCCCGCCGCCGCCGCCGCCGCTTGCACGGCGAAATCAGCCGCCCGAGGCG CCGGATTCCTCTGGATCTGAGGGGCACAGGCGCTTCCGGAGCTCTACTCGCCGGGCTTGT AGCTAAAGATGACCGAGGGGAAAAATACTCAGCTTGACCTTGAGACAGAAGGTTCAAGTA GCCCTGCAGCAACACAGAAGATGAAAGTCAAAATGGAAGATTCTGAAAGCAAAATTGAAT CCCCCACACTGGAGAAGTCTGAATCTAGAAGGAATGGGGTCGTTATCAGTTCACTTGCAA GAAATTTGCTTGCAGAGAGGTACAAGGACAGATTTGCTGCTCAGTTGTTGGGGGATGAGG ATGAAGACGAAACTGATGATGAAGATGATAGCAGCAGTACTTCGCCAGATGGTAGTAGTC CATCTGTTTCAGAAAGTATTGATATCTCTGGCACATCTCCAAAGGATAGATCAAATGATC TTCTCGAGAAGCACAATAATTTGCTAAATCTATTCAATCGAATGATGAGTTCTATAAGGT TGCTGCACCTACGGAAGAAGATGACTACATTTAAGAACATTGCCACCCAGGTGGAAATAC TCACAAAGAGGGAGTTCTTATATACACATTTAGCCCAAATGAAGCATTTATTTCCAGAAG CAATCCAGATAAAGAAAATACTTTTGCATGACGAGAAAAGCCTATGCATGTATGCTGACA TGGAAATTACAATTCTAATGGATACCGTAGAAAGTAGTAGTCCTGATCAGTCCCTGTCCA TGGCAATATGCGAGGCTTTTCACTCAAAGCTTTTGAGTTTTTTGGATGCTCATCATAAGG ATATTGATATTCCTGAGGCCATGCTACCAGAGCCCTTCAATTCAAGGGATAAGCTGCATC TCAAGGCACCACTTGATGGACATTCTGCTGAGCCACTTCTACAGAGTTCTAACAGAAATG AACTTTTGAATGCTTCACACTTCCCATGTTCTTTTCAAAAGCTTATGTCCCAGAAAATTA TTGCTGATGGAACAGATAGGACTAAGTTGCTTTCTGATCCGGCAGAACTCAGTATGCTGA GTGCTGATGATACAGAAGGGCCCAAGAGAAGCTCTAACAAGCAAGACCAGCATGCTTCGA TTCCATTCAAGACTGATATTTCTTCTACTCCAAACCGCCATTTGATCTCCAGCTGTCAAG GGAGTACACCAAAGCAAGGGACTTTATTACATTCACCCCTGATGGCTGAAACACCAGCAA TGCAGACACCAAGAAGGCCATTGCCCACTCAGATTGAGAAACTTGAAACCACTAGTGGAC AAACTTCTGAAGCACGATCTGCCAGTTCAGCTCGCAGGTCACTAAAAATGTTTTCACCAT CAAAAATTCAGGAATGCTCTTCTGATCATGATGGGGCCATCCTTACCCTGGAACATGAGG TTACAGCTGGCAAATGCCTTTTCCCAGATGAAACTCACAATTTTACTAACTCACTGGAGG AAAACAATCCTGCCATTTGCTTTGCTGATGTAGACAAAACCAAAGAAGTCGACCCAGCAG AATCCCAGGAAAAGATAGCTTCTTTACAACTCACATTCGACATAGTCTGCGATATTTCTC GGTCTACCAAGAATTCACTTATTACAAAACAGGAACTTTTTCACAATATTCTTGCTAACA ACTTGGAGATAGAAGAGACAGGGGAGATAGAAGAACAGCTGCATATTTTGGAGGACCTGT CTCCTGATTGGATATCTAAGAAGGTGATACCTGGTGGAGATATTCTTTACAGCATTAAAG AAATAGCAGATCAGAAATCAGTTCGTGCAAGACTCGTAGAAGTCATATGAGATACTACTG ATGCTTTCAAGGCCGAAGAATCAACAATGTGATGTGACTACTGATGTTGTAGGACTTGAT CAGCTGGATTGCTGAAATCCCAACTTACCATCATGAAATCCTCTGGATTGCTCCTTAATT TCTTCGTCTACTTCCAAACATTAGCAGAAACAAACGCAGATTACTCAACATGTTCTTTTA CTGGCACTCGACATTTGAGTAATCCTCTGGATCTCTTTAGTGCTGACATGGTTTGGAATT CACACCACCATATAATAGGATTGAACCATGCTATCTGTGAGACTCTGAACAGCCTTGTTA GATTGCACGAGAGCACAAGTGCTGTGGTTGTTCCCACGAGAATGCGATGTTGCAAATTCG ATCGGTTTGTGTATGAATACGATGTAATGTAGGTATGTAGCACATGCTCGTATGGTTCTC TGAGTGTACTATGTTAGTCATGAGCGAAGTGAGGGAATTCCTTCAGATTGGATCCCTTAG GAGAGAGAGAGAGAAGGTATTATGAAATGTAATCAGATCTTTGACGATCCAGTATTAGCT AGCAAGTATATGGACTCAGACTTTGATGATTACCTAGTGTATGTATTAGCTTCACCCTTT GAAC