Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0484300-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:18297933:18300228:-1 gene:Os10g0484300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os10t0484300-01)
Sequence

ATGCCGCTCGCCACGCTGCTCGGCCACCTCGCCGCCGGCCGCTTCGGCCTCGTGCAGGCG
CTCACCGGCGCCGCGACCGCGGCGGCCGCGCACCGACTCCTCCACCTCCTCCTCCGCACA
GCGCCGCCGCCTCCCCTCCCGGACCTCGTCTCCCTCGCGCGGTGGTCGCGCGCCCACTTC
CGCGCGCCGCTCCCGCTCCGGCTCCACGGGCTCCTCCTCGCCCGCCTCGCCTCCAAGGGG
CTCTACCCCCTCCTCCGCTCCGAGCTCCACGTCCTCGCCGCGGCGCGCCTCCACTCCCCC
GCATCCATCCTCCGCGCTCTCCCCTCCCCGTCCGCGTCCGCGTCCGCATCCACGCCGCTC
ATCGCCGACATGCTCGTCCTCGCCCTCGCCAGGGCATCCCAGCCCCTCAGGGCGTACGAC
GCGTTCCTCCTCGCCGGGGAGAGCCACCCGCGGCACCGCCCCTCCACCTCCTCCGTGAAC
GCCCTTCTCGCCGGCCTCGTCGGCGCCAAGCGGGTCGACCTCGCCGAGAAGGCGTTCAGG
AGCGCGCTGCGGCGGCGCGTGTCACCGGACATCTACACCTTCAACACCGTCATCTCCGGC
CTCTGCAGGATCGGCCAGCTCCGCAAAGCCGGCGATGTCGCCAAGGACATCAAGGCATGG
GGTCTGGCTCCCTCTGTGGCCACCTACAATAGCCTCATCGATGGGTACTGCAAGAAGGGT
GGAGCTGGGAACATGTACCATGTCGACATGCTTTTGAAGGAGATGGTCGAAGCCGGGATC
TCACCGACTGCAGTTACATTTGGTGTGTTGATCAATGGGTATTGCAAGAACTCGAATACT
GCGGCCGCAGTGAGAGTCTTCGAGGAGATGAAGCAGCAGGGGATCGCTGCGAGTGTCGTG
ACGTATAATTCGCTAATTTCAGGTCTCTGCAGTGAGGGTAAGGTGGAGGAAGGGGTGAAG
CTGATGGAGGAGATGGAGGATTTGGGGCTGTCACCCAATGAAATCACCTTTGGCTGTGTT
CTGAAAGGGTTTTGTAAGAAGGGAATGATGGCAGATGCCAATGATTGGATTGATGGTATG
ACAGAGAGGAATGTGGAACCTGATGTGGTTATTTACAATATCTTGATCGATGTGTATCGC
CGTCTTGGAAAAATGGAGGATGCAATGGCGGTGAAGGAGGCAATGGCAAAGAAGGGGATC
AGTCCCAATGTCACAACATATAATTGCTTGATAACAGGGTTTAGCCGCAGTGGGGATTGG
AGGAGTGCTTCTGGCCTTCTGGATGAGATGAAGGAGAAAGGTATTGAAGCAGACGTCGTC
ACTTACAATGTGCTTATTGGTGCTTTGTGCTGCAAAGGTGAGGTACGGAAAGCTGTAAAG
CTCTTGGATGAAATGTCGGAAGTTGGATTGGAACCAAACCATCTGACCTACAATACCATA
ATACAGGGGTTCTGTGATAAGGGTAACATTAAGTCTGCCTATGAAATTAGAACCAGGATG
GAAAAATGTCGGAAACGGGCAAATGTGGTTACGTACAATGTGTTCATCAAGTATTTCTGC
CAGATAGGGAAGATGGATGAAGCTAATGATCTACTCAATGAGATGTTGGACAAATGTCTA
GTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGATGGAAAAAGGCTATACA
CCAGATATTAGAGGGTGCACTGTCTCACAAGCTTCTGAAAACCCAGCATCATCCTGA

Peptide Sequence

PEP ID

Os10t0484300-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:18297933:18300228:-1 gene:Os10g0484300 transcript:Os10t0484300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os10t0484300-01)
Sequence

MPLATLLGHLAAGRFGLVQALTGAATAAAAHRLLHLLLRTAPPPPLPDLVSLARWSRAHF
RAPLPLRLHGLLLARLASKGLYPLLRSELHVLAAARLHSPASILRALPSPSASASASTPL
IADMLVLALARASQPLRAYDAFLLAGESHPRHRPSTSSVNALLAGLVGAKRVDLAEKAFR
SALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKG
GAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVV
TYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGM
TERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDW
RSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTI
IQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCL
VPNGITYETIKEGMMEKGYTPDIRGCTVSQASENPASS

Transcript Sequence

Transcript ID

Os10t0484300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:18297933:18300228:-1 gene:Os10g0484300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os10t0484300-01)
Sequence

ATATTCATGTAATCATGTCCTAACATTCGCAACAATTATGTTTCTTTTCAAGTCCTGAAA
AGAACATGTTACTCTCCCCAATAGGCGTCGCCGGCGCCGCAAACTCGCCATGCCGCTCGC
CACGCTGCTCGGCCACCTCGCCGCCGGCCGCTTCGGCCTCGTGCAGGCGCTCACCGGCGC
CGCGACCGCGGCGGCCGCGCACCGACTCCTCCACCTCCTCCTCCGCACAGCGCCGCCGCC
TCCCCTCCCGGACCTCGTCTCCCTCGCGCGGTGGTCGCGCGCCCACTTCCGCGCGCCGCT
CCCGCTCCGGCTCCACGGGCTCCTCCTCGCCCGCCTCGCCTCCAAGGGGCTCTACCCCCT
CCTCCGCTCCGAGCTCCACGTCCTCGCCGCGGCGCGCCTCCACTCCCCCGCATCCATCCT
CCGCGCTCTCCCCTCCCCGTCCGCGTCCGCGTCCGCATCCACGCCGCTCATCGCCGACAT
GCTCGTCCTCGCCCTCGCCAGGGCATCCCAGCCCCTCAGGGCGTACGACGCGTTCCTCCT
CGCCGGGGAGAGCCACCCGCGGCACCGCCCCTCCACCTCCTCCGTGAACGCCCTTCTCGC
CGGCCTCGTCGGCGCCAAGCGGGTCGACCTCGCCGAGAAGGCGTTCAGGAGCGCGCTGCG
GCGGCGCGTGTCACCGGACATCTACACCTTCAACACCGTCATCTCCGGCCTCTGCAGGAT
CGGCCAGCTCCGCAAAGCCGGCGATGTCGCCAAGGACATCAAGGCATGGGGTCTGGCTCC
CTCTGTGGCCACCTACAATAGCCTCATCGATGGGTACTGCAAGAAGGGTGGAGCTGGGAA
CATGTACCATGTCGACATGCTTTTGAAGGAGATGGTCGAAGCCGGGATCTCACCGACTGC
AGTTACATTTGGTGTGTTGATCAATGGGTATTGCAAGAACTCGAATACTGCGGCCGCAGT
GAGAGTCTTCGAGGAGATGAAGCAGCAGGGGATCGCTGCGAGTGTCGTGACGTATAATTC
GCTAATTTCAGGTCTCTGCAGTGAGGGTAAGGTGGAGGAAGGGGTGAAGCTGATGGAGGA
GATGGAGGATTTGGGGCTGTCACCCAATGAAATCACCTTTGGCTGTGTTCTGAAAGGGTT
TTGTAAGAAGGGAATGATGGCAGATGCCAATGATTGGATTGATGGTATGACAGAGAGGAA
TGTGGAACCTGATGTGGTTATTTACAATATCTTGATCGATGTGTATCGCCGTCTTGGAAA
AATGGAGGATGCAATGGCGGTGAAGGAGGCAATGGCAAAGAAGGGGATCAGTCCCAATGT
CACAACATATAATTGCTTGATAACAGGGTTTAGCCGCAGTGGGGATTGGAGGAGTGCTTC
TGGCCTTCTGGATGAGATGAAGGAGAAAGGTATTGAAGCAGACGTCGTCACTTACAATGT
GCTTATTGGTGCTTTGTGCTGCAAAGGTGAGGTACGGAAAGCTGTAAAGCTCTTGGATGA
AATGTCGGAAGTTGGATTGGAACCAAACCATCTGACCTACAATACCATAATACAGGGGTT
CTGTGATAAGGGTAACATTAAGTCTGCCTATGAAATTAGAACCAGGATGGAAAAATGTCG
GAAACGGGCAAATGTGGTTACGTACAATGTGTTCATCAAGTATTTCTGCCAGATAGGGAA
GATGGATGAAGCTAATGATCTACTCAATGAGATGTTGGACAAATGTCTAGTTCCAAACGG
GATCACTTATGAAACGATAAAAGAGGGGATGATGGAAAAAGGCTATACACCAGATATTAG
AGGGTGCACTGTCTCACAAGCTTCTGAAAACCCAGCATCATCCTGAGAAGTATGGAATCT
ATGACCTTCATCAAGCAAGCATTCGCAATTGGAAGTAAATGAAACAATGCTGGCAAACTG
GAGTACCTGATTGTGCTCATAATGGAGATGGTCAGCTAGTATTCACCATGGCTTTTGAAG
ATGGGCCTGGCCCCTTGATTCTGGCCAATTGAGCATCTAGTCTAGGTAAGACTAACGTAC
CAAAGTAACTGCAGATAGTTAACGGTCTCTTGTGTAAATTTCTTATCCCATCTATTGTTA
ATGCCCATACAAATGACAGAAGAGATTGCAATCTCAGC