Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os10t0480200-02
CDS Infomation	cds chromosome:IRGSP-1.0:10:18086262:18092494:1 gene:Os10g0480200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMEOBOX GENE 9 description:Similar to Rolled leaf1. (Os10t0480200-01);Similar to Rolled leaf1. (Os10t0480200-02);Similar to Homeobox-leucine zipper protein HOX9. (Os10t0480200-03)
Sequence	ATGGCGGCGGCGGTGGCGATGCGGAGCGGCAGCGGCAGCGACGGCGGCGGCGGCGGGTAC GACAAGGCCGGGATGGACTCCGGCAAGTACGTGCGGTACACGCCGGAGCAGGTGGAGGCG CTGGAGAGGGTGTACGCCGAGTGCCCCAAGCCCAGCTCCTCCCGCCGCCAGCAGCTGCTC CGCGACTGTCCCATCCTCGCCAACATCGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAAC AGAAGGTGCCGAGATAAGCAGCGGAAGGAGGCATCAAGGCTTCAGGCCGTGAACCGAAAA TTGACGGCGATGAATAAGCTTCTCATGGAGGAGAATGAGCGTCTTCAGAAGCAGGTCTCC CAGCTGGTCCATGAGAACGCGTACATGAAGCAGCAACTTCAGAATCCGTCATTGGGCAAT GATACAAGCTGTGAATCAAATGTGACCACTCCTCAGAACCCTCTGAGAGATGCAAGTAAC CCGTCTGGACTCCTTACAATTGCGGAGGAGACCCTGACAGAGTTCCTCTCCAAGGCTACA GGGACTGCTGTTGATTGGGTGCCAATGCCTGGGATGAAGCCTGGTCCGGATTCGTTTGGT ATTGTGGCCGTTTCACATGGTTGCCGTGGTGTTGCTGCCCGTGCCTGTGGTTTGGTGAAT CTAGAACCAACAAAGATCGTGGAGATCTTAAAAGACCGCCCATCTTGGTTCCGTGATTGT CGAAGTCTTGAAGTCTTCACAATGTTTCCAGCTGGAAATGGTGGCACGATCGAACTTGTT TACATGCAGATGTATGCTCCTACTACTTTGGTTCCTGCACGAGATTTTTGGACACTTAGA TACACAACTACAATGGAGGATGGCAGCCTTGTGGTCTGTGAGAGATCATTGAGTGGTTCT GGAGGTGGTCCAAGTACAGCCTCCGCACAGCAATTTGTAAGAGCTGAGATGCTTCCTAGC GGCTATCTAGTGCGCCCATGCGAGGGTGGTGGCTCCATCGTGCATATTGTGGACCATCTG GATCTTGAGGCTTGGAGTGTTCCAGAAGTGCTTCGGCCACTCTACGAGTCATCTAGGGTA GTTGCTCAGAAAATGACTACTGCAGCACTACGGCACATCAGACAAATTGCTCAAGAGACA AGCGGGGAGGTTGTATACGCTTTGGGGAGGCAACCTGCTGTTTTGCGGACATTTAGTCAG AGGTTGAGTAGAGGCTTCAATGATGCTATAAGTGGTTTCAATGATGATGGTTGGTCTGTC ATGGGTGGGGATGGCATTGAAGATGTGATCATTGCTTGCAATGCAAAGAAGGTTAGGAAT ACTAGCACTTCGGCCAATGCTTTTGTAACTCCAGGAGGTGTTATATGTGCTAAGGCATCC ATGCTACTGCAGAGTGTCCCACCTGCAGTTTTGGTTCGATTTTTGAGGGAACATCGTTCT GAATGGGCGGATTATAACTTCGATGCATATTCAGCTTCATCTCTGAAGACAAGCTCATGT TCACTTCCTGGGTTGCGGCCTATGAGATTTTCTGGGAGCCAGATCATTATGCCACTTGCT CACACGGTGGAGAATGAGGAGATTTTAGAAGTTGTCCGTCTTGAAGGACAAGCACTTACA CATGATGATGGTCTTATGTCTAGAGATATTCACCTGCTTCAGCTTTGCACTGGAATAGAT GAGAAATCAATGGGATCCTGCTTCCAGCTTGTCTCTGCACCAATCGATGAGCTTTTCCCT GATGATGCTCCGTTAATATCTTCAGGCTTTCGTGTTATACCGCTGGACATGAAAACAGAT GGTACACCTGCTGGTAGAACATTAGATTTGGCATCTAGCCTTGAAGTTGGTTCAACTGCA CAGCCCACAGGGGATGCATCTATGGATGACTGTAATCTACGATCAGTGCTGACAATTGCC TTTCAGTTCCCTTATGAAATGCATCTCCAAGACAGCGTTGCAACTATGGCCCGGCAATAT GTCCGCAGTATTGTTTCCTCTGTTCAGAGAGTATCAATGGCTATTTCTCCTTCTCGGTCT GGCTTGAATGCTGGGCAGAAGATAATTTCAGGCTTCCCTGAAGCCCCAACGCTAGCTCGT TGGATTTGCCAAAGCTACCAGTTCCATTTGGGGGTGGAGTTACTTAGGCAGGCAGATGAT GCTGGGGAAGCACTATTGAAAATGCTATGGGATTACGAAGACGCTATTTTGTGCTGTTCT TTCAAGGAAAAGCCTGTGTTTACTTTTGCCAACGAGATGGGACTAAACATGCTAGAAACA TCTCTCGTCGCTCTCCAAGATCTCTCACTGGACAAGATATTTGATGAAGCCGGTAGGAAG GCCCTATACAACGAGATCCCGAAATTGATGGAACAGGGTTACGTGTACCTGCCTGGTGGA GTGTGCTTGTCCGGGATGGGGCGCCATGTTTCTTTCGAGCAAGCTGTAGCATGGAAGGTG CTCGGAGAAGACAACAATGTGCACTGCCTCGCCTTCTGCTTCGTCAACTGGTCCTTCGTG TGA

Peptide Sequence

PEP ID	Os10t0480200-02
PEP Infomation	pep chromosome:IRGSP-1.0:10:18086262:18092494:1 gene:Os10g0480200 transcript:Os10t0480200-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMEOBOX GENE 9 description:Similar to Rolled leaf1. (Os10t0480200-01);Similar to Rolled leaf1. (Os10t0480200-02);Similar to Homeobox-leucine zipper protein HOX9. (Os10t0480200-03)
Sequence	MAAAVAMRSGSGSDGGGGGYDKAGMDSGKYVRYTPEQVEALERVYAECPKPSSSRRQQLL RDCPILANIEPKQIKVWFQNRRCRDKQRKEASRLQAVNRKLTAMNKLLMEENERLQKQVS QLVHENAYMKQQLQNPSLGNDTSCESNVTTPQNPLRDASNPSGLLTIAEETLTEFLSKAT GTAVDWVPMPGMKPGPDSFGIVAVSHGCRGVAARACGLVNLEPTKIVEILKDRPSWFRDC RSLEVFTMFPAGNGGTIELVYMQMYAPTTLVPARDFWTLRYTTTMEDGSLVVCERSLSGS GGGPSTASAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRPLYESSRV VAQKMTTAALRHIRQIAQETSGEVVYALGRQPAVLRTFSQRLSRGFNDAISGFNDDGWSV MGGDGIEDVIIACNAKKVRNTSTSANAFVTPGGVICAKASMLLQSVPPAVLVRFLREHRS EWADYNFDAYSASSLKTSSCSLPGLRPMRFSGSQIIMPLAHTVENEEILEVVRLEGQALT HDDGLMSRDIHLLQLCTGIDEKSMGSCFQLVSAPIDELFPDDAPLISSGFRVIPLDMKTD GTPAGRTLDLASSLEVGSTAQPTGDASMDDCNLRSVLTIAFQFPYEMHLQDSVATMARQY VRSIVSSVQRVSMAISPSRSGLNAGQKIISGFPEAPTLARWICQSYQFHLGVELLRQADD AGEALLKMLWDYEDAILCCSFKEKPVFTFANEMGLNMLETSLVALQDLSLDKIFDEAGRK ALYNEIPKLMEQGYVYLPGGVCLSGMGRHVSFEQAVAWKVLGEDNNVHCLAFCFVNWSFV

Transcript Sequence

Transcript ID	Os10t0480200-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:10:18086262:18092494:1 gene:Os10g0480200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMEOBOX GENE 9 description:Similar to Rolled leaf1. (Os10t0480200-01);Similar to Rolled leaf1. (Os10t0480200-02);Similar to Homeobox-leucine zipper protein HOX9. (Os10t0480200-03)
Sequence	GTCAGGTTATTTTTTTTTCTCCTCGTCTCCTGACGATTTCGCTTTTGCTCGAAATCTCCC AGGTTTGTTGTTGTTGTGTTGAAGGCGGAGAAGAGGGGAGGCTTTGGTGGTGGTGGAGGA GGAGGATGGCGGCGGCGGTGGCGATGCGGAGCGGCAGCGGCAGCGACGGCGGCGGCGGCG GGTACGACAAGGCCGGGATGGACTCCGGCAAGTACGTGCGGTACACGCCGGAGCAGGTGG AGGCGCTGGAGAGGGTGTACGCCGAGTGCCCCAAGCCCAGCTCCTCCCGCCGCCAGCAGC TGCTCCGCGACTGTCCCATCCTCGCCAACATCGAGCCCAAGCAGATCAAGGTCTGGTTCC AGAACAGAAGGTGCCGAGATAAGCAGCGGAAGGAGGCATCAAGGCTTCAGGCCGTGAACC GAAAATTGACGGCGATGAATAAGCTTCTCATGGAGGAGAATGAGCGTCTTCAGAAGCAGG TCTCCCAGCTGGTCCATGAGAACGCGTACATGAAGCAGCAACTTCAGAATCCGTCATTGG GCAATGATACAAGCTGTGAATCAAATGTGACCACTCCTCAGAACCCTCTGAGAGATGCAA GTAACCCGTCTGGACTCCTTACAATTGCGGAGGAGACCCTGACAGAGTTCCTCTCCAAGG CTACAGGGACTGCTGTTGATTGGGTGCCAATGCCTGGGATGAAGCCTGGTCCGGATTCGT TTGGTATTGTGGCCGTTTCACATGGTTGCCGTGGTGTTGCTGCCCGTGCCTGTGGTTTGG TGAATCTAGAACCAACAAAGATCGTGGAGATCTTAAAAGACCGCCCATCTTGGTTCCGTG ATTGTCGAAGTCTTGAAGTCTTCACAATGTTTCCAGCTGGAAATGGTGGCACGATCGAAC TTGTTTACATGCAGATGTATGCTCCTACTACTTTGGTTCCTGCACGAGATTTTTGGACAC TTAGATACACAACTACAATGGAGGATGGCAGCCTTGTGGTCTGTGAGAGATCATTGAGTG GTTCTGGAGGTGGTCCAAGTACAGCCTCCGCACAGCAATTTGTAAGAGCTGAGATGCTTC CTAGCGGCTATCTAGTGCGCCCATGCGAGGGTGGTGGCTCCATCGTGCATATTGTGGACC ATCTGGATCTTGAGGCTTGGAGTGTTCCAGAAGTGCTTCGGCCACTCTACGAGTCATCTA GGGTAGTTGCTCAGAAAATGACTACTGCAGCACTACGGCACATCAGACAAATTGCTCAAG AGACAAGCGGGGAGGTTGTATACGCTTTGGGGAGGCAACCTGCTGTTTTGCGGACATTTA GTCAGAGGTTGAGTAGAGGCTTCAATGATGCTATAAGTGGTTTCAATGATGATGGTTGGT CTGTCATGGGTGGGGATGGCATTGAAGATGTGATCATTGCTTGCAATGCAAAGAAGGTTA GGAATACTAGCACTTCGGCCAATGCTTTTGTAACTCCAGGAGGTGTTATATGTGCTAAGG CATCCATGCTACTGCAGAGTGTCCCACCTGCAGTTTTGGTTCGATTTTTGAGGGAACATC GTTCTGAATGGGCGGATTATAACTTCGATGCATATTCAGCTTCATCTCTGAAGACAAGCT CATGTTCACTTCCTGGGTTGCGGCCTATGAGATTTTCTGGGAGCCAGATCATTATGCCAC TTGCTCACACGGTGGAGAATGAGGAGATTTTAGAAGTTGTCCGTCTTGAAGGACAAGCAC TTACACATGATGATGGTCTTATGTCTAGAGATATTCACCTGCTTCAGCTTTGCACTGGAA TAGATGAGAAATCAATGGGATCCTGCTTCCAGCTTGTCTCTGCACCAATCGATGAGCTTT TCCCTGATGATGCTCCGTTAATATCTTCAGGCTTTCGTGTTATACCGCTGGACATGAAAA CAGATGGTACACCTGCTGGTAGAACATTAGATTTGGCATCTAGCCTTGAAGTTGGTTCAA CTGCACAGCCCACAGGGGATGCATCTATGGATGACTGTAATCTACGATCAGTGCTGACAA TTGCCTTTCAGTTCCCTTATGAAATGCATCTCCAAGACAGCGTTGCAACTATGGCCCGGC AATATGTCCGCAGTATTGTTTCCTCTGTTCAGAGAGTATCAATGGCTATTTCTCCTTCTC GGTCTGGCTTGAATGCTGGGCAGAAGATAATTTCAGGCTTCCCTGAAGCCCCAACGCTAG CTCGTTGGATTTGCCAAAGCTACCAGTTCCATTTGGGGGTGGAGTTACTTAGGCAGGCAG ATGATGCTGGGGAAGCACTATTGAAAATGCTATGGGATTACGAAGACGCTATTTTGTGCT GTTCTTTCAAGGAAAAGCCTGTGTTTACTTTTGCCAACGAGATGGGACTAAACATGCTAG AAACATCTCTCGTCGCTCTCCAAGATCTCTCACTGGACAAGATATTTGATGAAGCCGGTA GGAAGGCCCTATACAACGAGATCCCGAAATTGATGGAACAGGGTTACGTGTACCTGCCTG GTGGAGTGTGCTTGTCCGGGATGGGGCGCCATGTTTCTTTCGAGCAAGCTGTAGCATGGA AGGTGCTCGGAGAAGACAACAATGTGCACTGCCTCGCCTTCTGCTTCGTCAACTGGTCCT TCGTGTGACCCAAAATCCAATCCACCATGCTCGCAGTCATCGTCGTTGTCGTCAGATCTC CATTTTTTGCAATCTCTGTAGAAGAGAGGACACCAAACCAACCACAAACCTGTCAGCTGT TAGCTAATGATTCTACTAGCTTTTCTAGATCTTTGAAGGCAAAATGCTGCCGGTGCCTGT AAAGAGTGTGTGCGTGCGTGTGTAAATTTGGGCGCGTTTTGCACTAATTTGATCTGGGGT AAGGAGGCGCTGGCTGCTGCTGTGCTGTAGTTTGGTAAAAGTTGAGTACACTAACCTTGG ATGGTCTCGAACTGTATGATGAAATTCCTAGCAGTAAAATTTCAACTTGGATCCG