Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0478200-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:17913831:17917765:1 gene:Os10g0478200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYTOPLASMIC MALATE DEHYDROGENASE description:Cytoplasmic malate dehydrogenase. (Os10t0478200-01)
Sequence

ATGGCGAAGGAACCGATGCGCGTGCTCGTCACCGGCGCCGCAGGACAAATTGGATATGCT
CTTGTCCCCATGATTGCTAGGGGTGTGATGTTGGGTGCTGACCAGCCTGTTATTCTACAC
ATGCTTGACATTCCACCAGCTACTGAATCTCTTAATGGCCTTAAGATGGAGCTGGTTGAT
GCTGCATTTCCTCTTTTGAAGGGAATTGTCGCAACAACTGATGTTGTGGAGGCCTGCACT
GGTGTGAATGTTGCGGTTATGGTTGGTGGGTTCCCCAGGAAGGAGGGAATGGAAAGGAAG
GATGTTATGTCAAAAAATGTCTCCATCTACAAATCCCAAGCTTCTGCTCTTGAGGCTCAT
GCAGCCCCTAACTGCAAGGTTCTGGTAGTTGCCAATCCAGCAAACACCAACGCTCTCATC
TTAAAAGAATTCGCTCCATCCATCCCTGAGAAGAACATTACTTGCCTCACCCGTCTTGAC
CACAACAGGGCACTTGGCCAGATCTCTGAAAAACTTAATGTCCAAGTTACTGATGTGAAG
AATGCGATCATCTGGGGCAACCACTCATCCACCCAGTACCCTGATGTTAACCACGCCACT
GTGAAGACTCCCAGTGGAGAGAAGCCTGTCAGGGAACTCGTTGCTGATGATGAGTGGTTA
AATACGGAATTCATCTCTACCGTCCAGCAGCGTGGTGCCGCCATCATCAAGGCGAGGAAG
CAATCCAGTGCCCTATCTGCTGCCAGCTCTGCATGCGATCACATTCGTGACTGGGTTCTT
GGCACTCCTGAGGGAACATTTGTCTCCATGGGTGTGTACTCTGATGGTTCGTATGGTGTG
CCTGCTGGTCTGATCTACTCGTTCCCAGTAACATGCAGTGGTGGCGAATGGACGATTGTT
CAGGGTCTCCCGATCGACGAGTTCTCAAGGAAGAAGATGGACGCGACTGCCCAGGAGCTG
TCGGAGGAGAAGACGCTCGCTTACTCATGCCTCAACTAA

Peptide Sequence

PEP ID

Os10t0478200-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:17913831:17917765:1 gene:Os10g0478200 transcript:Os10t0478200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYTOPLASMIC MALATE DEHYDROGENASE description:Cytoplasmic malate dehydrogenase. (Os10t0478200-01)
Sequence

MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPATESLNGLKMELVD
AAFPLLKGIVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAH
AAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISEKLNVQVTDVK
NAIIWGNHSSTQYPDVNHATVKTPSGEKPVRELVADDEWLNTEFISTVQQRGAAIIKARK
QSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPAGLIYSFPVTCSGGEWTIV
QGLPIDEFSRKKMDATAQELSEEKTLAYSCLN

Transcript Sequence

Transcript ID

Os10t0478200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:17913831:17917765:1 gene:Os10g0478200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYTOPLASMIC MALATE DEHYDROGENASE description:Cytoplasmic malate dehydrogenase. (Os10t0478200-01)
Sequence

CTCGCAAAACTCACCCAAAAGAGCAGCGTCGCCTCTCCTCCTCCTCCCTAACCCCTACGC
TTCCAGAACCTTCTCGAAGCTCCCGCTCCCCCCCCCCTTCCGCTCCAATGGCGAAGGAAC
CGATGCGCGTGCTCGTCACCGGCGCCGCAGGACAAATTGGATATGCTCTTGTCCCCATGA
TTGCTAGGGGTGTGATGTTGGGTGCTGACCAGCCTGTTATTCTACACATGCTTGACATTC
CACCAGCTACTGAATCTCTTAATGGCCTTAAGATGGAGCTGGTTGATGCTGCATTTCCTC
TTTTGAAGGGAATTGTCGCAACAACTGATGTTGTGGAGGCCTGCACTGGTGTGAATGTTG
CGGTTATGGTTGGTGGGTTCCCCAGGAAGGAGGGAATGGAAAGGAAGGATGTTATGTCAA
AAAATGTCTCCATCTACAAATCCCAAGCTTCTGCTCTTGAGGCTCATGCAGCCCCTAACT
GCAAGGTTCTGGTAGTTGCCAATCCAGCAAACACCAACGCTCTCATCTTAAAAGAATTCG
CTCCATCCATCCCTGAGAAGAACATTACTTGCCTCACCCGTCTTGACCACAACAGGGCAC
TTGGCCAGATCTCTGAAAAACTTAATGTCCAAGTTACTGATGTGAAGAATGCGATCATCT
GGGGCAACCACTCATCCACCCAGTACCCTGATGTTAACCACGCCACTGTGAAGACTCCCA
GTGGAGAGAAGCCTGTCAGGGAACTCGTTGCTGATGATGAGTGGTTAAATACGGAATTCA
TCTCTACCGTCCAGCAGCGTGGTGCCGCCATCATCAAGGCGAGGAAGCAATCCAGTGCCC
TATCTGCTGCCAGCTCTGCATGCGATCACATTCGTGACTGGGTTCTTGGCACTCCTGAGG
GAACATTTGTCTCCATGGGTGTGTACTCTGATGGTTCGTATGGTGTGCCTGCTGGTCTGA
TCTACTCGTTCCCAGTAACATGCAGTGGTGGCGAATGGACGATTGTTCAGGGTCTCCCGA
TCGACGAGTTCTCAAGGAAGAAGATGGACGCGACTGCCCAGGAGCTGTCGGAGGAGAAGA
CGCTCGCTTACTCATGCCTCAACTAAAACTAAGCAATACCCAGAGGGACAGATAGTGAGC
GATTGCCCGCTCCCGTGTTTTTGAATAAAAGAGACTTTTAAGTTCCATCACATAGAAACT
GTTTATCTCAGACCGCTGCACATCGCGAGATGTGGAGCGCAGATGCCGTTGCTGGTTTTA
CTCCAGTGTGTATTGAGGCTTTGTACTAGCTCCCTTTTTTTTGCCTGGTGATTCGCAGGA
CATTTGCTGAAAACATTGAACCCATTTGACATCTGATGGAATCATGGACCAGTAGCAAGT
ACATTTTGCG