Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0476400-02
CDS Infomation

cds chromosome:IRGSP-1.0:10:17746797:17750016:-1 gene:Os10g0476400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Snf7 family protein. (Os10t0476400-01);Snf7 family protein. (Os10t0476400-02)
Sequence

ATGAACCCCTTCGCGAAGAAGCCCACGCCGCGAGAGGCGATCCGGAGCAGCAAACGTGAG
CTGACGAATGCTACCAGAGGTATTGAGAGAGATATTGGAACGTTGCAGCTAGAGGAAAAG
AGGCTAGTTGCTGAAATCAAAAGGACTGCAAAAACTGGCAATGAGGCAGCAACCAGAATT
CTGGCCCGCCAGCTGATCAGGCTAAGACAGCAAATTTCTAATTTACAAGGTAGCAGAGCT
CAGATTAGGGGCATTGCAACACATACACAGGCAATGCATGCCAACACTTCAGTGGCTGCT
GGCATGCAAAGTGCAAGCAAAGCAATGGGAGCTTTGAACAAGCAAATGGATCCAGCCAAA
CAGATGAAGGTGATGCAAGAATTCCAAAAACAGTCAGCACAAATGGATATGACGAATGAG
ATGATGTCTGACTCCATTGACAATATCTTAGACGATGATCAAGCTGAGGAAGAAACTGAA
GACCTTGCAAATCAGGTCCTGGATGAGATTGGTGTTGATATTGCCTCACAGTTATCCTCA
GCTCCTAAAGGAAGGATTACTGGAAAGAAGGTTCAAGCTGATGAAAGTTCAGAATTGGAC
GAACTCGAGAAGAGGCTGGCTGCTCTGAAAAATCCATAG

Peptide Sequence

PEP ID

Os10t0476400-02
PEP Infomation

pep chromosome:IRGSP-1.0:10:17746797:17750016:-1 gene:Os10g0476400 transcript:Os10t0476400-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Snf7 family protein. (Os10t0476400-01);Snf7 family protein. (Os10t0476400-02)
Sequence

MNPFAKKPTPREAIRSSKRELTNATRGIERDIGTLQLEEKRLVAEIKRTAKTGNEAATRI
LARQLIRLRQQISNLQGSRAQIRGIATHTQAMHANTSVAAGMQSASKAMGALNKQMDPAK
QMKVMQEFQKQSAQMDMTNEMMSDSIDNILDDDQAEEETEDLANQVLDEIGVDIASQLSS
APKGRITGKKVQADESSELDELEKRLAALKNP

Transcript Sequence

Transcript ID

Os10t0476400-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:17746797:17750016:-1 gene:Os10g0476400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Snf7 family protein. (Os10t0476400-01);Snf7 family protein. (Os10t0476400-02)
Sequence

AACGCGGCTTCCCCCACCGCCATCTCCTCCGCTCCCTCCCCGGCGACGAGCAAGCACACC
GCCGGCGCCGCGGCGGAGATGAACCCCTTCGCGAAGAAGCCCACGCCGCGAGAGGCGATC
CGGAGCAGCAAACGTGAGCTGACGAATGCTACCAGAGGTATTGAGAGAGATATTGGAACG
TTGCAGCTAGAGGAAAAGAGGCTAGTTGCTGAAATCAAAAGGACTGCAAAAACTGGCAAT
GAGGCAGCAACCAGAATTCTGGCCCGCCAGCTGATCAGGCTAAGACAGCAAATTTCTAAT
TTACAAGGTAGCAGAGCTCAGATTAGGGGCATTGCAACACATACACAGGCAATGCATGCC
AACACTTCAGTGGCTGCTGGCATGCAAAGTGCAAGCAAAGCAATGGGAGCTTTGAACAAG
CAAATGGATCCAGCCAAACAGATGAAGGTGATGCAAGAATTCCAAAAACAGTCAGCACAA
ATGGATATGACGAATGAGATGATGTCTGACTCCATTGACAATATCTTAGACGATGATCAA
GCTGAGGAAGAAACTGAAGACCTTGCAAATCAGGTCCTGGATGAGATTGGTGTTGATATT
GCCTCACAGTTATCCTCAGCTCCTAAAGGAAGGATTACTGGAAAGAAGGTTCAAGCTGAT
GAAAGTTCAGAATTGGACGAACTCGAGAAGAGGCTGGCTGCTCTGAAAAATCCATAGAAG
AGGGAACTTCTCTGTAACCCAACATTTTACACAAAGACCTGCTCTGTACCTACATTTCAA
ATTCGTGATACGAAACAAAATAGTACATTTGCACCTGTAAATATCGGATGGTTGATACTT
CAACTATGTGAAGATGGATGTGTATCAACCTGACAAGCCCGAAAATTCAGTGAGT