Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0462900-02
CDS Infomation

cds chromosome:IRGSP-1.0:10:17048122:17053406:1 gene:Os10g0462900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to mitochondrial chaperonin-60. (Os10t0462900-01);Similar to mitochondrial chaperonin-60. (Os10t0462900-02)
Sequence

ATGTACCGCGCGGCCGCCAGCCTCGCCTCCAAGGCTCGGCAAGCCGGGAGCAGCGCTCGC
CAGGTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAGTTTGGA
GTTGAGGCCCGTGCTTTGATGCTGAGGGGTGTTGAGGAGTTGGCAGATGCAGTCAAAGTG
ACAATGGGTCCTAAGGGACGCAATGTGGTTATTGAGCAGAGCTATGGTTCACCGAAAGTC
ACAAAGGACGGTGTGACTGTTGCCAAGAGCATTGAGTTCAAGGATAGAGTCAAGAATGTT
GGTGCAAGCCTTGTAAAGCAGGTTGCTAATGCGACCAATGATACTGCTGGAGATGGTACC
ACTTGTGCTACTGTATTGACTAAAGCAATATTTACTGAGGGGTGCAAGTCTGTTGCTGCT
GGCATGAATGCAATGGATTTAAGGCGTGGTATTTCAATGGCTGTTGATGCTGTTGTAACT
AACCTAAAGGGCATGGCTAGAATGATCAGCACATCAGAGGAAATAGCTCAGGTGGGCACA
ATATCAGCAAATGGGGAAAGGGAAATTGGTGAGCTTATTGCAAAGGCTATGGAGAAGGTT
GGCAAGGAGGGTGTAATCACCATTGCGGATGGTAACACCCTTTACAATGAGCTTGAAGTT
GTGGAAGGCATGAAACTTGACAGAGGCTACATCTCTCCTTACTTTGTTACCAACCCAAAG
ACCCAGAAATGTGAACTGGATGACCCCTTGATCCTGATACATGACAAGAAGGTTTCGAAC
CTGCATGCAGTAGTTAAAGTCTTGGAGTTGGCTCTGAAGAAGCAAAGGCCTCTGCTGATT
GTTGCTGAAGATGTAGAGAGCGAGGCATTGGGTACTCTGATTATTAACAAGCTTCGTGCA
GGCATCAAGGTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTA
CAGGACCTTGCGATCCTTACTGGAGGAGAAGTCATAACTGAAGAGCTAGGAATGAATCTT
GAGAAGTTCGAGCCTCAGATGTTGGGTACATGCAAGAAGGTAACTGTATCTAAGGACGAC
ACTGTTATTCTTGATGGAGCTGGAGACAAGAAATCCATTGAAGAGAGGGCTGAGCAGATT
AGATCTGCAATTGAGCTAAGCACTTCTGATTATGACAAGGAAAAGCTACAGGAGCGGTTG
GCAAAGCTCTCCGGAGGTGTTGCTGTTCTAAAGATCGGAGGAGCCAGTGAAGCTGAAGTT
GGTGAGAAGAAGGATAGAGTGACAGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAG
GGTATTGTACCAGGTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTG
CCGACTGCTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGACA
CCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTTGTCGGTAAGCTT
TTGGAACAAGATAACACCGACCTTGGCTATGATGCGGCTAAAGGTGAATATGTGGACATG
GTGAAGGCTGGTATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCA
AGCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAAGGAAGAG
AAGGAGGCGCCAGCGATGGGAGGCATGGGTGGAATGGATTACTAA

Peptide Sequence

PEP ID

Os10t0462900-02
PEP Infomation

pep chromosome:IRGSP-1.0:10:17048122:17053406:1 gene:Os10g0462900 transcript:Os10t0462900-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to mitochondrial chaperonin-60. (Os10t0462900-01);Similar to mitochondrial chaperonin-60. (Os10t0462900-02)
Sequence

MYRAAASLASKARQAGSSARQVGSRLALSRNYAAKDIKFGVEARALMLRGVEELADAVKV
TMGPKGRNVVIEQSYGSPKVTKDGVTVAKSIEFKDRVKNVGASLVKQVANATNDTAGDGT
TCATVLTKAIFTEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKGMARMISTSEEIAQVGT
ISANGEREIGELIAKAMEKVGKEGVITIADGNTLYNELEVVEGMKLDRGYISPYFVTNPK
TQKCELDDPLILIHDKKVSNLHAVVKVLELALKKQRPLLIVAEDVESEALGTLIINKLRA
GIKVCAVKAPGFGENRKANLQDLAILTGGEVITEELGMNLEKFEPQMLGTCKKVTVSKDD
TVILDGAGDKKSIEERAEQIRSAIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEV
GEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLPTANFDQKIGVQIIQNALKT
PVHTIASNAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAA
SVSSLMTTTESIIVEIPKEEKEAPAMGGMGGMDY

Transcript Sequence

Transcript ID

Os10t0462900-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:17048122:17053406:1 gene:Os10g0462900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to mitochondrial chaperonin-60. (Os10t0462900-01);Similar to mitochondrial chaperonin-60. (Os10t0462900-02)
Sequence

AAGAAAAAAAAAGGCTTCATAGCTCAACCTCCTCGCCGCCGCCGCTCACCTCCCCTCCCC
TCCCATCCCTCCTCCTCCCTAGCCCCAGGTCGCTGCTCGGCTCCGCCATGTACCGCGCGG
CCGCCAGCCTCGCCTCCAAGGCTCGGCAAGCCGGGAGCAGCGCTCGCCAGGTTGGAAGCA
GGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAGTTTGGAGTTGAGGCCCGTG
CTTTGATGCTGAGGGGTGTTGAGGAGTTGGCAGATGCAGTCAAAGTGACAATGGGTCCTA
AGGGACGCAATGTGGTTATTGAGCAGAGCTATGGTTCACCGAAAGTCACAAAGGACGGTG
TGACTGTTGCCAAGAGCATTGAGTTCAAGGATAGAGTCAAGAATGTTGGTGCAAGCCTTG
TAAAGCAGGTTGCTAATGCGACCAATGATACTGCTGGAGATGGTACCACTTGTGCTACTG
TATTGACTAAAGCAATATTTACTGAGGGGTGCAAGTCTGTTGCTGCTGGCATGAATGCAA
TGGATTTAAGGCGTGGTATTTCAATGGCTGTTGATGCTGTTGTAACTAACCTAAAGGGCA
TGGCTAGAATGATCAGCACATCAGAGGAAATAGCTCAGGTGGGCACAATATCAGCAAATG
GGGAAAGGGAAATTGGTGAGCTTATTGCAAAGGCTATGGAGAAGGTTGGCAAGGAGGGTG
TAATCACCATTGCGGATGGTAACACCCTTTACAATGAGCTTGAAGTTGTGGAAGGCATGA
AACTTGACAGAGGCTACATCTCTCCTTACTTTGTTACCAACCCAAAGACCCAGAAATGTG
AACTGGATGACCCCTTGATCCTGATACATGACAAGAAGGTTTCGAACCTGCATGCAGTAG
TTAAAGTCTTGGAGTTGGCTCTGAAGAAGCAAAGGCCTCTGCTGATTGTTGCTGAAGATG
TAGAGAGCGAGGCATTGGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAGGTCT
GTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTACAGGACCTTGCGA
TCCTTACTGGAGGAGAAGTCATAACTGAAGAGCTAGGAATGAATCTTGAGAAGTTCGAGC
CTCAGATGTTGGGTACATGCAAGAAGGTAACTGTATCTAAGGACGACACTGTTATTCTTG
ATGGAGCTGGAGACAAGAAATCCATTGAAGAGAGGGCTGAGCAGATTAGATCTGCAATTG
AGCTAAGCACTTCTGATTATGACAAGGAAAAGCTACAGGAGCGGTTGGCAAAGCTCTCCG
GAGGTGTTGCTGTTCTAAAGATCGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGG
ATAGAGTGACAGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAG
GTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGACTGCTAACT
TTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGACACCGGTGCACACTA
TTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTTGTCGGTAAGCTTTTGGAACAAGATA
ACACCGACCTTGGCTATGATGCGGCTAAAGGTGAATATGTGGACATGGTGAAGGCTGGTA
TCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGCGTATCATCTC
TGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAAGGAAGAGAAGGAGGCGCCAG
CGATGGGAGGCATGGGTGGAATGGATTACTAATCAACACCCATTAAAGTAAACTAAAAAC
ATACTCCTGGGATTTAGGATTTTTTTTGCGGTGCAAGTTCATCGTCGATGTATTTTTTGT
TCTTGTTGATGAGGTGGTTGTCAGACAATTTTGATTCCACTGGCGGTAGGACGGGTTGGA
ACGAATAAAATTTTAGTTCAGAGCTAGGAGTTCTTGAGAGCTGAGGACTGCACTTCGATC
AAAATTGAATCTGACACCTTGTGCCGGAACATTTTTATGAGCTGATCTGAAAGATTACGC
CTTTTGGCC