Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os10t0462800-01
CDS Infomation	cds chromosome:IRGSP-1.0:10:17040029:17047589:1 gene:Os10g0462800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:WHITE STRIPE LEAF 3 description:Component of the plastid-encoded plastid RNA polymerase (PEP), peripheral subunit of PEP complex, OsPAP1/OspTAC3, Early chloroplast development (Os10t0462800-01)
Sequence	ATGGCCACCCCTACCCCCACCCCCTCCACCTCCGCCCCCGCCGCGCCGCCCTCCTCCGCC TTCCCCCTCACTGCCGCCGCGCGCTTCCCCCGCGCGCGCGCGGCCTCCGCCTCCACCTCC AGCACGCGCGCGTCCGCGCTCGCCGAGCGGCGCCGCACGCGGCGGCGCCGGCTGCCCGAG GGGAGCGGCGGCGGCGGCGACCGCTCGGCGGCCGCGGGGGCGGTGGAGAAGGGCCTGCGC CTCGCCTTCCTGGAGCAGCTCGCGGAGCGCGCGCGCGCCGCGGACGCCGCGGGGGTCGCG GATGCCATCTACGACATGGTCGCCGCGGGGCTCTCCCCCGGCCCGCGCTCCTTCCACGGC CTCGTCGCCGCCCACGTTCTCGCCGGCGACGCGGAAGGCGCCATGCAATCTCTTAGAAGG GAGCTAAGTTCTGGGGTGCGCCCTTTACATGAAACATTTGTGGCTTTAGTCCGTGTTTTT GCCAAGAAGGGTCTTGCTACCAGGGGCATGGAGATTCTGGCTGCTATGGAAAGATATAAG TATGATATTCGCAAGGCTTGGCTAATTCTTGTAGAGGAACTAGTCAATAATAACTATCTG GAGGACGCCAATACAGTATTTCTGAAAGGAACAGAAGGTGGTTTGCAAGGGACTGATGAA ATTTATGATCTTTTGATTGAAGAAGATTGTAAAGCTGGAGATCACTCCAATGCTCTAACA GTTGCATACAAAATGGAAGCTTCTGGAAGAATGGCAACCACATTCCATTTCAATTGCCTC CTAAGTGTGCAGGCTACTTGTGGAATTCCTGAGATTGCTTTTGCAACATTCGAAAACATG GAATATGGAGGTGAAGGTTATATGAAACCAGATACCGAGTCCTACAATTGGGTCATACAG GCATTTACTAGGGCTACATCCTATGACAGGGCAGGAGATGTGGCCGAATTACTAGGGATG ATGGTGGAAGACCACAAACGTATTCAGCCTAATGCAAGAACATATGCGTTGTTAGTGGAA TGCTTCACAAAGTACTCTATGGTTAATGAAGCAATAAGGCATTTCCGTGCCTTACGGAGA ATCCCCGGAGGAACAAAAGTTTTATATAATGAAGGAAATTGTGGTGATCCGCTTTCTCTC TATCTGCGATCTCTATGCCTTGATGGAAGAGCTGATGAGTTGCTTGAGGCATTAGAGGCA ATGTCTAATGATGGTCAGACTATTGCACCTAGAGCAATGATCTTAAACAGAAAATATCGC ACGTTGGTGAGCACCTGGATAGAACCATTACAAGAAGAAGCTGATGTTGGTTTTGAAATT GATTATGTTGCCAGATATATTGAAGAAGGAGGTCTTACTGGTGAGCGCAAACGCTGGGTG CCTCGAAGAGGCAAAACTCCCTTAGATCCAGATGAGTTTGGGTTTGCCTATTCAAATCCA ATAGAGACATCATTTAAACAGCGCTGCTTTGAGGAATTGAAGTTATATCATCGCAAACTT CTAATAACATTGAGAAATGAAGGCCCTGGTATTTTAGGTGATGTATCTGAAGATGATGTA CGAAGAGTTATTGAAAGACTAAAAAAGTTAGTTGTAGGGCCAAAGAAAAATGTTGTTAAG CCCAAGGCAGCTAGCAAAATGGTAGTATCTGAGTTGAAGACTGAGCTAGAGGCACAAGGG TTGCCTACAGATGGAACTAGGCAGGTACTTTACCAGAGAGTTCAAAAGGCTAGGAGAATC AATCGTTCACGTGGTATACCACTTTGGGTTCCTCCTGTGGAAGATGAGGAAGAGGTTGAT GAAGAGTTAGATGAATTGATTTCACGAATCAAGCTAGAAGATGGGAATACAGAGTTTTGG AAGCGGCGTTTCCTGGGAGAAACTCGGAATTATCTTTGTGAAGAAGTTAATGATGAAGAA GATGCAGATTTAGATGACGATGAGTTGGATGATGATGACGACGAAGATGACGACGACGAT GATACCACAAAAGGAGAAGAAGATGAGATCGATGAGGAGGATGCTGTTGAACAAACGGAA AATCAAGCCGGAGATGAAACTAAAGACAAACCATCGAAAGGACCCAAGCAGCATCTTCAA ATGATAGGAGTCCAGTTATTAAAGGATCTAGAAAAGACATCTGTTTCATCAAAGAAGTCA AAAAGGGTACCTGAGATTGATGATGATGAAGATTGGTTTCCTGAAGACCCAATTGAAGCT TTTAAGGTTATGCGTGAGACAAGGTTGTTCGATGTGTCAGATATGTATACTACTGCAGAT GCTTGGGGATGGACATGGGAAAGAGAGATAAAGAATAAGATGCCACGCAAGTGGTCACAA GAATGGGAGGTTGAGTTGGCTATCAAGATAATGCATAAGGTGATAGATCTTGGTGGTACC CCAACGATTGGAGATTGTGCCATTATATTGCGGGCTGCAATGAGAGTGCCGCTCCCGTCT GCATTTATGACAATATTGCAAACAACGCATAGCCTTGGCTACAAATTTGGAAGCCCTCTG TACGACGAGGCGATCTTGCTGTGCCTTGATCTGGAGGAGATCGACGCGGCCATTGCGGTG GTAGCAGAAATGGAGACAAATGGAATCAAGGTACCCGACGAGACCTTGGACAAGGTGCTC GCAGCTAAACAATCTGGTGGAAACTCTGCGCTCCAACCGCCACCTGCAGAGGAGTAA

Peptide Sequence

PEP ID	Os10t0462800-01
PEP Infomation	pep chromosome:IRGSP-1.0:10:17040029:17047589:1 gene:Os10g0462800 transcript:Os10t0462800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:WHITE STRIPE LEAF 3 description:Component of the plastid-encoded plastid RNA polymerase (PEP), peripheral subunit of PEP complex, OsPAP1/OspTAC3, Early chloroplast development (Os10t0462800-01)
Sequence	MATPTPTPSTSAPAAPPSSAFPLTAAARFPRARAASASTSSTRASALAERRRTRRRRLPE GSGGGGDRSAAAGAVEKGLRLAFLEQLAERARAADAAGVADAIYDMVAAGLSPGPRSFHG LVAAHVLAGDAEGAMQSLRRELSSGVRPLHETFVALVRVFAKKGLATRGMEILAAMERYK YDIRKAWLILVEELVNNNYLEDANTVFLKGTEGGLQGTDEIYDLLIEEDCKAGDHSNALT VAYKMEASGRMATTFHFNCLLSVQATCGIPEIAFATFENMEYGGEGYMKPDTESYNWVIQ AFTRATSYDRAGDVAELLGMMVEDHKRIQPNARTYALLVECFTKYSMVNEAIRHFRALRR IPGGTKVLYNEGNCGDPLSLYLRSLCLDGRADELLEALEAMSNDGQTIAPRAMILNRKYR TLVSTWIEPLQEEADVGFEIDYVARYIEEGGLTGERKRWVPRRGKTPLDPDEFGFAYSNP IETSFKQRCFEELKLYHRKLLITLRNEGPGILGDVSEDDVRRVIERLKKLVVGPKKNVVK PKAASKMVVSELKTELEAQGLPTDGTRQVLYQRVQKARRINRSRGIPLWVPPVEDEEEVD EELDELISRIKLEDGNTEFWKRRFLGETRNYLCEEVNDEEDADLDDDELDDDDDEDDDDD DTTKGEEDEIDEEDAVEQTENQAGDETKDKPSKGPKQHLQMIGVQLLKDLEKTSVSSKKS KRVPEIDDDEDWFPEDPIEAFKVMRETRLFDVSDMYTTADAWGWTWEREIKNKMPRKWSQ EWEVELAIKIMHKVIDLGGTPTIGDCAIILRAAMRVPLPSAFMTILQTTHSLGYKFGSPL YDEAILLCLDLEEIDAAIAVVAEMETNGIKVPDETLDKVLAAKQSGGNSALQPPPAEE

Transcript Sequence

Transcript ID	Os10t0462800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:10:17040029:17047589:1 gene:Os10g0462800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:WHITE STRIPE LEAF 3 description:Component of the plastid-encoded plastid RNA polymerase (PEP), peripheral subunit of PEP complex, OsPAP1/OspTAC3, Early chloroplast development (Os10t0462800-01)
Sequence	AAACCCCGCCGCGGCCACCATGGCCACCCCTACCCCCACCCCCTCCACCTCCGCCCCCGC CGCGCCGCCCTCCTCCGCCTTCCCCCTCACTGCCGCCGCGCGCTTCCCCCGCGCGCGCGC GGCCTCCGCCTCCACCTCCAGCACGCGCGCGTCCGCGCTCGCCGAGCGGCGCCGCACGCG GCGGCGCCGGCTGCCCGAGGGGAGCGGCGGCGGCGGCGACCGCTCGGCGGCCGCGGGGGC GGTGGAGAAGGGCCTGCGCCTCGCCTTCCTGGAGCAGCTCGCGGAGCGCGCGCGCGCCGC GGACGCCGCGGGGGTCGCGGATGCCATCTACGACATGGTCGCCGCGGGGCTCTCCCCCGG CCCGCGCTCCTTCCACGGCCTCGTCGCCGCCCACGTTCTCGCCGGCGACGCGGAAGGCGC CATGCAATCTCTTAGAAGGGAGCTAAGTTCTGGGGTGCGCCCTTTACATGAAACATTTGT GGCTTTAGTCCGTGTTTTTGCCAAGAAGGGTCTTGCTACCAGGGGCATGGAGATTCTGGC TGCTATGGAAAGATATAAGTATGATATTCGCAAGGCTTGGCTAATTCTTGTAGAGGAACT AGTCAATAATAACTATCTGGAGGACGCCAATACAGTATTTCTGAAAGGAACAGAAGGTGG TTTGCAAGGGACTGATGAAATTTATGATCTTTTGATTGAAGAAGATTGTAAAGCTGGAGA TCACTCCAATGCTCTAACAGTTGCATACAAAATGGAAGCTTCTGGAAGAATGGCAACCAC ATTCCATTTCAATTGCCTCCTAAGTGTGCAGGCTACTTGTGGAATTCCTGAGATTGCTTT TGCAACATTCGAAAACATGGAATATGGAGGTGAAGGTTATATGAAACCAGATACCGAGTC CTACAATTGGGTCATACAGGCATTTACTAGGGCTACATCCTATGACAGGGCAGGAGATGT GGCCGAATTACTAGGGATGATGGTGGAAGACCACAAACGTATTCAGCCTAATGCAAGAAC ATATGCGTTGTTAGTGGAATGCTTCACAAAGTACTCTATGGTTAATGAAGCAATAAGGCA TTTCCGTGCCTTACGGAGAATCCCCGGAGGAACAAAAGTTTTATATAATGAAGGAAATTG TGGTGATCCGCTTTCTCTCTATCTGCGATCTCTATGCCTTGATGGAAGAGCTGATGAGTT GCTTGAGGCATTAGAGGCAATGTCTAATGATGGTCAGACTATTGCACCTAGAGCAATGAT CTTAAACAGAAAATATCGCACGTTGGTGAGCACCTGGATAGAACCATTACAAGAAGAAGC TGATGTTGGTTTTGAAATTGATTATGTTGCCAGATATATTGAAGAAGGAGGTCTTACTGG TGAGCGCAAACGCTGGGTGCCTCGAAGAGGCAAAACTCCCTTAGATCCAGATGAGTTTGG GTTTGCCTATTCAAATCCAATAGAGACATCATTTAAACAGCGCTGCTTTGAGGAATTGAA GTTATATCATCGCAAACTTCTAATAACATTGAGAAATGAAGGCCCTGGTATTTTAGGTGA TGTATCTGAAGATGATGTACGAAGAGTTATTGAAAGACTAAAAAAGTTAGTTGTAGGGCC AAAGAAAAATGTTGTTAAGCCCAAGGCAGCTAGCAAAATGGTAGTATCTGAGTTGAAGAC TGAGCTAGAGGCACAAGGGTTGCCTACAGATGGAACTAGGCAGGTACTTTACCAGAGAGT TCAAAAGGCTAGGAGAATCAATCGTTCACGTGGTATACCACTTTGGGTTCCTCCTGTGGA AGATGAGGAAGAGGTTGATGAAGAGTTAGATGAATTGATTTCACGAATCAAGCTAGAAGA TGGGAATACAGAGTTTTGGAAGCGGCGTTTCCTGGGAGAAACTCGGAATTATCTTTGTGA AGAAGTTAATGATGAAGAAGATGCAGATTTAGATGACGATGAGTTGGATGATGATGACGA CGAAGATGACGACGACGATGATACCACAAAAGGAGAAGAAGATGAGATCGATGAGGAGGA TGCTGTTGAACAAACGGAAAATCAAGCCGGAGATGAAACTAAAGACAAACCATCGAAAGG ACCCAAGCAGCATCTTCAAATGATAGGAGTCCAGTTATTAAAGGATCTAGAAAAGACATC TGTTTCATCAAAGAAGTCAAAAAGGGTACCTGAGATTGATGATGATGAAGATTGGTTTCC TGAAGACCCAATTGAAGCTTTTAAGGTTATGCGTGAGACAAGGTTGTTCGATGTGTCAGA TATGTATACTACTGCAGATGCTTGGGGATGGACATGGGAAAGAGAGATAAAGAATAAGAT GCCACGCAAGTGGTCACAAGAATGGGAGGTTGAGTTGGCTATCAAGATAATGCATAAGGT GATAGATCTTGGTGGTACCCCAACGATTGGAGATTGTGCCATTATATTGCGGGCTGCAAT GAGAGTGCCGCTCCCGTCTGCATTTATGACAATATTGCAAACAACGCATAGCCTTGGCTA CAAATTTGGAAGCCCTCTGTACGACGAGGCGATCTTGCTGTGCCTTGATCTGGAGGAGAT CGACGCGGCCATTGCGGTGGTAGCAGAAATGGAGACAAATGGAATCAAGGTACCCGACGA GACCTTGGACAAGGTGCTCGCAGCTAAACAATCTGGTGGAAACTCTGCGCTCCAACCGCC ACCTGCAGAGGAGTAATCTGATTGGAACAAGAAGCCCCTTTGTAGCCATGATCTAGCACA CCACATAGAATCATCAGCTCCATGCCATGGATCATTTGTCTTGAGCTCGCCAGATCAACC TTTGGCAGTGATGTGAGATCACTGCTCTGATGATAATCTGTCAAGGTGGAGAAAGATGAT CTTATGCTTTGCCCTTGTTGGCCTTCCACTCCACACTCGATGTATTTACAGACAACCAAT TTTGATACTCCTAGATGAAATGGAATTGAAACTGCTTGGAAGTTGGAACACGACATGTGC TAGCGTTTGCAGGATTTTA