Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0458300-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:16821151:16825037:1 gene:Os10g0458300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Domain of unknown function DUF1618 domain containing protein. (Os10t0458300-01)
Sequence

ATGGCCGCCGTCGCCTCCTCGGCCGAGGTCCACGAGGGCACCCGGAGCTGCGTCCTGCTC
AACGTCCGCGGCTACAGGGCGGCCCGCCGCGACGCCACCACCGCCACGTCCTACACGAGC
AACGGCCATCCCATCGAGGTCAGCTTCCGCGCCGCCCTCCCGCCGGTCCTCTCCGACTTC
TACGTCTACTGCCCCGCCCTGCAGCTGCAAGAACCAGCCGATTATCCCTCCATGGTGCCC
AAGGCCATCGCCGTCGACGGCGACCTCTTCCTCTTCCGTATCCCGATCGACCGCGTCGGC
ACCATGTCCCTCACCCACAACGACTACTTCGTCTACATGGCGCGGTCTCCCCCTCACCGC
CCGAGACTGGATCTGCTCCCGAACCCGTCGCACGATACCCTGGGAGACAAGGAGATCGCC
ATACTGAGCTGTGCCGATGGCGGCGAGCAGTACGTGGTGACCGCCCTCAGGACCATCCCC
GGCAGTAAAACCATCCACAGGCTGCATCTGTACCGCTCCAAACCGAACGGCGAGCAAGGG
AGATGGACTTCGCAGATGGTGTCTGTGGAGGGACCACTGATGAGGGACTTGGTGTGCCCC
ATCCCTGAGACGGTGCACAGGCAAGTGCACCACGTGACGAGCAAGGTGATCAGGCTGGGA
ACAGGTGCAAATGGCATGGTAGGGTGGGTGGATATCTGGCGCGGCATCCTCCTCTGCGAC
GTGCTCCAGGAGAGCCCCAAGCTCCATGACATGCCGCTGCCTCTGCCGGCCAAGAGCAAC
AGCCACAGGGCCTTCCTCAACACCACCGACCAGTACTGCGGCGACGTCGCCGTCAGCCGA
GACAAGAGCTTCATCAAGTACGTCGAGATGGAGATCGTCACGCCCAAGATCGTGAGCGCC
ACGCCACCAGGTGACTGTGATCCTGACCCGTTCCTCGAATGGCTGCGCCGTCGAGAATGC
AAGGACCTGAAACGCACCTTGGTCCATGGCCGCTGGAAGGCCACCACATGGAGGATGCCG
ATCCCGGTCACCTCATGGGACGATTGGTGCCGCGACTGCGCTGTTGAATCTGCCGAGCTC
AGCACTGACAACCCAAAGGCTTATGAGTTGCTGTGTGCTGTGAGCAAAGAAAGTCTTAAA
GAGGATGATGATGATAAGGCCATGGAGGCGGCAACGACAACCACGACGAGGTTGCCATTG
GGACGCCTGGGCATGGCTTACCCTGCCATGAGCATCGATGACGATGTCATTTACGTGCTG
ACAAAACCCGTCATGGGGAATGGCAAGGCGGCATTTCTGACTGCTGTTGATGTGAGGAGG
AAGAAGGTGCTGGCAGTGGCCAAGCTTGATAGCGCCGTTTTCATGCGTTACTACCTTGCC
GTTGGGATCTCCAAACATTTTTTCAGCGCTCCAGGTACAAGAGAATCACTTGGACAAGCT
GAAGATCATGGGCAGAAGTCAGCAAGAAGAAGAAGAAGAAGACGTGGAAAGCGGCAAGAG
TGA

Peptide Sequence

PEP ID

Os10t0458300-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:16821151:16825037:1 gene:Os10g0458300 transcript:Os10t0458300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Domain of unknown function DUF1618 domain containing protein. (Os10t0458300-01)
Sequence

MAAVASSAEVHEGTRSCVLLNVRGYRAARRDATTATSYTSNGHPIEVSFRAALPPVLSDF
YVYCPALQLQEPADYPSMVPKAIAVDGDLFLFRIPIDRVGTMSLTHNDYFVYMARSPPHR
PRLDLLPNPSHDTLGDKEIAILSCADGGEQYVVTALRTIPGSKTIHRLHLYRSKPNGEQG
RWTSQMVSVEGPLMRDLVCPIPETVHRQVHHVTSKVIRLGTGANGMVGWVDIWRGILLCD
VLQESPKLHDMPLPLPAKSNSHRAFLNTTDQYCGDVAVSRDKSFIKYVEMEIVTPKIVSA
TPPGDCDPDPFLEWLRRRECKDLKRTLVHGRWKATTWRMPIPVTSWDDWCRDCAVESAEL
STDNPKAYELLCAVSKESLKEDDDDKAMEAATTTTTRLPLGRLGMAYPAMSIDDDVIYVL
TKPVMGNGKAAFLTAVDVRRKKVLAVAKLDSAVFMRYYLAVGISKHFFSAPGTRESLGQA
EDHGQKSARRRRRRRGKRQE

Transcript Sequence

Transcript ID

Os10t0458300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:16821151:16825037:1 gene:Os10g0458300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Domain of unknown function DUF1618 domain containing protein. (Os10t0458300-01)
Sequence

CTCGATTGATCGGTTGCCATGGCCGCCGTCGCCTCCTCGGCCGAGGTCCACGAGGGCACC
CGGAGCTGCGTCCTGCTCAACGTCCGCGGCTACAGGGCGGCCCGCCGCGACGCCACCACC
GCCACGTCCTACACGAGCAACGGCCATCCCATCGAGGTCAGCTTCCGCGCCGCCCTCCCG
CCGGTCCTCTCCGACTTCTACGTCTACTGCCCCGCCCTGCAGCTGCAAGAACCAGCCGAT
TATCCCTCCATGGTGCCCAAGGCCATCGCCGTCGACGGCGACCTCTTCCTCTTCCGTATC
CCGATCGACCGCGTCGGCACCATGTCCCTCACCCACAACGACTACTTCGTCTACATGGCG
CGGTCTCCCCCTCACCGCCCGAGACTGGATCTGCTCCCGAACCCGTCGCACGATACCCTG
GGAGACAAGGAGATCGCCATACTGAGCTGTGCCGATGGCGGCGAGCAGTACGTGGTGACC
GCCCTCAGGACCATCCCCGGCAGTAAAACCATCCACAGGCTGCATCTGTACCGCTCCAAA
CCGAACGGCGAGCAAGGGAGATGGACTTCGCAGATGGTGTCTGTGGAGGGACCACTGATG
AGGGACTTGGTGTGCCCCATCCCTGAGACGGTGCACAGGCAAGTGCACCACGTGACGAGC
AAGGTGATCAGGCTGGGAACAGGTGCAAATGGCATGGTAGGGTGGGTGGATATCTGGCGC
GGCATCCTCCTCTGCGACGTGCTCCAGGAGAGCCCCAAGCTCCATGACATGCCGCTGCCT
CTGCCGGCCAAGAGCAACAGCCACAGGGCCTTCCTCAACACCACCGACCAGTACTGCGGC
GACGTCGCCGTCAGCCGAGACAAGAGCTTCATCAAGTACGTCGAGATGGAGATCGTCACG
CCCAAGATCGTGAGCGCCACGCCACCAGGTGACTGTGATCCTGACCCGTTCCTCGAATGG
CTGCGCCGTCGAGAATGCAAGGACCTGAAACGCACCTTGGTCCATGGCCGCTGGAAGGCC
ACCACATGGAGGATGCCGATCCCGGTCACCTCATGGGACGATTGGTGCCGCGACTGCGCT
GTTGAATCTGCCGAGCTCAGCACTGACAACCCAAAGGCTTATGAGTTGCTGTGTGCTGTG
AGCAAAGAAAGTCTTAAAGAGGATGATGATGATAAGGCCATGGAGGCGGCAACGACAACC
ACGACGAGGTTGCCATTGGGACGCCTGGGCATGGCTTACCCTGCCATGAGCATCGATGAC
GATGTCATTTACGTGCTGACAAAACCCGTCATGGGGAATGGCAAGGCGGCATTTCTGACT
GCTGTTGATGTGAGGAGGAAGAAGGTGCTGGCAGTGGCCAAGCTTGATAGCGCCGTTTTC
ATGCGTTACTACCTTGCCGTTGGGATCTCCAAACATTTTTTCAGCGCTCCAGGTACAAGA
GAATCACTTGGACAAGCTGAAGATCATGGGCAGAAGTCAGCAAGAAGAAGAAGAAGAAGA
CGTGGAAAGCGGCAAGAGTGATGCTGTCCAGCAGTGAGATGCCAATGGTAGAATATTATC
GGCTTGAGTCTGTTGCTTTCATATGGATAATGGATTTGCTACTGCTATGTGCAGTTCTGT
AACAAATTCTAGAACCTTATCATCTGGGTACTTTTTTTGTTCTTTTTCCCTTCTTGCAAG
CTTCTTGGAGAAAACCTCTACAATAGCTTGGCTATAAATTTCAGTTAACTATGGCTC