Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0457000-02
CDS Infomation

cds chromosome:IRGSP-1.0:10:16752343:16755164:1 gene:Os10g0457000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os10t0457000-01);Hypothetical conserved gene. (Os10t0457000-02)
Sequence

GCTATTAAGATTTTGAATATGATCAAGCTATATGGAAAACCAATAAGAGTAAACAAGGCT
TCACAAGACAAGAAGAGCCTTGATGTAGGGGCAAATCTTTTTATTGGCAATCTCGATCCG
GATGTTGACGAAAAGCTCCTGTACGATACCTTCAGTGCGTTTGGAGTGATTGTGACTAAT
CCCAAGATAATGCGAGATCCTGAAACTGGAAATTCACGAGGCTTTGGCTTTGTGAGCTAT
GACTCCTTTGAATCATCTGATCAAGCTATAGAGGCAATGAACAACCAACATCTATGTAAC
CGGCCAATTACTGTCTCTTATGCCTACAAGAAAGACACAAAAGGAGAACGCCATGGCACA
CCTGCAGAGAGGTTGCTAGCAGCAAATAACCCTGGTTCTCAGAAGAATAGGCCACACACT
ATGTTTGCAAGTGGCCCGCCTACGCAAGGGCTTGCAAATGGTGCACCTGTGCCTCGACCT
TTTTCCAATGGGGCAGTGCCACCTCAGATTCAACATGTTCGACCGCCGCCACCTCCTATG
CAACAATTCCCTCCAATGCAGATGAATGGTCAGCCTGTTTGGCCTCCGCAGAATACACAG
CTACCACCCCACATGCCACCTCAAATGCATTACAGGCCTGCAGTGAGACCACCTCCACCA
AACATGATGCCACCCCCTCCTCTTGGCATGGTAAGGCCTCCGCCGCCTCCTTCCAGTATG
CCAGCTCCACCTATGTGGAGGCCACCCCCACCCCCACAACAAGCTGGTGGTATGCCACCA
CCTCCTATGTCCATGCCACCGCCGCCACCACCACCTTCTGGTTAA

Peptide Sequence

PEP ID

Os10t0457000-02
PEP Infomation

pep chromosome:IRGSP-1.0:10:16752343:16755164:1 gene:Os10g0457000 transcript:Os10t0457000-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os10t0457000-01);Hypothetical conserved gene. (Os10t0457000-02)
Sequence

AIKILNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN
PKIMRDPETGNSRGFGFVSYDSFESSDQAIEAMNNQHLCNRPITVSYAYKKDTKGERHGT
PAERLLAANNPGSQKNRPHTMFASGPPTQGLANGAPVPRPFSNGAVPPQIQHVRPPPPPM
QQFPPMQMNGQPVWPPQNTQLPPHMPPQMHYRPAVRPPPPNMMPPPPLGMVRPPPPPSSM
PAPPMWRPPPPPQQAGGMPPPPMSMPPPPPPPSG

Transcript Sequence

Transcript ID

Os10t0457000-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:16752343:16755164:1 gene:Os10g0457000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os10t0457000-01);Hypothetical conserved gene. (Os10t0457000-02)
Sequence

GCTATTAAGATTTTGAATATGATCAAGCTATATGGAAAACCAATAAGAGTAAACAAGGCT
TCACAAGACAAGAAGAGCCTTGATGTAGGGGCAAATCTTTTTATTGGCAATCTCGATCCG
GATGTTGACGAAAAGCTCCTGTACGATACCTTCAGTGCGTTTGGAGTGATTGTGACTAAT
CCCAAGATAATGCGAGATCCTGAAACTGGAAATTCACGAGGCTTTGGCTTTGTGAGCTAT
GACTCCTTTGAATCATCTGATCAAGCTATAGAGGCAATGAACAACCAACATCTATGTAAC
CGGCCAATTACTGTCTCTTATGCCTACAAGAAAGACACAAAAGGAGAACGCCATGGCACA
CCTGCAGAGAGGTTGCTAGCAGCAAATAACCCTGGTTCTCAGAAGAATAGGCCACACACT
ATGTTTGCAAGTGGCCCGCCTACGCAAGGGCTTGCAAATGGTGCACCTGTGCCTCGACCT
TTTTCCAATGGGGCAGTGCCACCTCAGATTCAACATGTTCGACCGCCGCCACCTCCTATG
CAACAATTCCCTCCAATGCAGATGAATGGTCAGCCTGTTTGGCCTCCGCAGAATACACAG
CTACCACCCCACATGCCACCTCAAATGCATTACAGGCCTGCAGTGAGACCACCTCCACCA
AACATGATGCCACCCCCTCCTCTTGGCATGGTAAGGCCTCCGCCGCCTCCTTCCAGTATG
CCAGCTCCACCTATGTGGAGGCCACCCCCACCCCCACAACAAGCTGGTGGTATGCCACCA
CCTCCTATGTCCATGCCACCGCCGCCACCACCACCTTCTGGTTAAACATATGCTGGTGAA
GGTTCCATACCATATGGCACATTGTAGCTGTAGACTGAGAATGTTGGTACCTTTCTTATA
TTTCCATGTAACTTGCAAACACTAGGAGAGGATCAGAATTCAGTGAGTTTAGCTGACACT
GATACAAATTCTCGAGGTTAACTGTATTTTGTTGGAAATACATGAATTTTGTGGTT