Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0456400-02
CDS Infomation

cds chromosome:IRGSP-1.0:10:16675641:16677869:1 gene:Os10g0456400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os10t0456400-01);Conserved hypothetical protein. (Os10t0456400-02)
Sequence

ATGCTGGGCCGGGCGGGGGCGCTGTCCGCGGCGCGGTGGCGCGGCGGCGCCGGGACCGGG
ACCGGGATCGGGATCGACCTGCGCGCCGCGCTGCGCTCCGGGGGCAACCTCCTCTTCGCG
CTCTTCGTGGCGGCCGTCCTCGCCTTCACCCTCCTCGCCGCGGTCCACAGCCCCGACGAC
CCGCTCCTCCACCCCTCATCGCACCAGCTCACCGCGTTCCTCACCTCCGCCACCTCCAAC
TCCACCTTCCTCGCCGACGACTCCGTCCTCCGCACCGGCGAGGACTTCGCCGCCGCCATC
GGCGCCAACTCCTCCGATGCCGCCGCCGCCGCGGAGGCCACCGTCGTCGCCGAGGCCGTC
CCGTTCATCAAGCTCGAGGACGTCGCGACCAAGGAGGAGTCGTCGGGGGCGGAGCGGGCC
GTCACCGTTGACACCGACGCCAGCTCGGACGCGGGCGCCGCGGCGGAGGAGAACCCCATC
GTCGAGGCGGTCTCCTGCGACACGGAGGCGCCGGTGGACTGCACGGGGGACAAGGATCTC
TTCAACCTGCTCATGCGCACGGCGATCGAGAAGTTCTCCGACCTCCACTTCTACCGCTTC
GGCCGCCCCGTCGCCGTGCCGGGGAGCCCCATGGAGTGCGACCTCGCATGGCGCTTCCGC
CCCGCCGAGGACACCAACGGCCGCACCACCTACTACAAGGACTACCGCCGCTTCACGCTC
ACCCGCGACGTCAACACCTGCAACCTCGTCGTCGGCAATGTGGGCGAGTACCACTCCGGC
ACCGGCGCCAAGCGCAGCGGCCGCCGCAAGGGCAAGAAGGGGAAGAAGGGCAAGCGCGAG
GCACCGGTCACCGACTTTGTGCCGGCCAAGACGCAGATGAGGCTCGATGAGAACGCTGCC
AATGCAGACACCACGGCCGCCTCCGAGCCGGAGCTAGTTGTCGGTGAAGCTGTCAATGAC
AATTTACCGGTGGTCGAATCTGAGTCTGAATTCAGCCGCGGAAAGTATCTCATCTACATG
GGCGGTGGTGAGAGATGCAAGAGCATGAACCACTACGTTTGGGGATTCTTGTGTGCACTT
GGTGAGGCACAGTACTTGAACCGGACACTTGTTATGGACCTTAATGTGTGCCTCAATTCA
CGGTATACTTCAAGTGGCAAGGATGAAGAGAGAGATTTTAGGCTCTACTTTGATTTTGAG
CACTTGAAGCAATCAGCATCGGTCATTGACCAGAGCCAGTTCTGGACAGATTGGGGGAAG
TGGCACAAGAAGGATAGACTGAAGAATCACTACACTGAAGACATCAAGGTGACCCCGATG
CAACTTCGTGACGTCAAGGACACACTGATCATGAGGAAGTTTGGGAATGTTGAGCCTGAT
AACTTCTGGTCTCGTGTATGTGAGGGTGAGACGGAGGCAGTGATCAAGCGCCCATGGTAT
TTATTGTGGAAATCGCGTCGATTGATGGAGATCGTGTCTGCCATTTCCTCCCGGATGGAT
TGGGACTTTGATTCAGTCCATGTTGTGAGGGGGGAGAAAGCCCAGAACAAACAGTTGTGG
CCAAATCTTGATAGAGATACTTCTCCAGATAGTCTCCTTACGACACTTAATGATAAGGTC
GGTGCTGGCCGGCATTTGTACATTGCAACCAATGAACCCGATAAATCATTCTTTGACCCA
ATGAAGGGTAAGTATCGAACACACTTCCTGGATGACTTCAAGGATTTATGGGATGAGAAC
AGCGAGTGGTACACTGAAACAAAGGAGCTGAGCAATGGTAATGCTGTTGAATTCGATGGA
TACATGAGGGTTGCAGTTGACACTGAGGTGTTCCTTCGGGGGAAGAGGAAATTGGAGACA
TTCAGTGATCTTACTCGTGATTGCAAGAATGGTGTCAATACATGCCCTGCTTCCTCATGA

Peptide Sequence

PEP ID

Os10t0456400-02
PEP Infomation

pep chromosome:IRGSP-1.0:10:16675641:16677869:1 gene:Os10g0456400 transcript:Os10t0456400-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os10t0456400-01);Conserved hypothetical protein. (Os10t0456400-02)
Sequence

MLGRAGALSAARWRGGAGTGTGIGIDLRAALRSGGNLLFALFVAAVLAFTLLAAVHSPDD
PLLHPSSHQLTAFLTSATSNSTFLADDSVLRTGEDFAAAIGANSSDAAAAAEATVVAEAV
PFIKLEDVATKEESSGAERAVTVDTDASSDAGAAAEENPIVEAVSCDTEAPVDCTGDKDL
FNLLMRTAIEKFSDLHFYRFGRPVAVPGSPMECDLAWRFRPAEDTNGRTTYYKDYRRFTL
TRDVNTCNLVVGNVGEYHSGTGAKRSGRRKGKKGKKGKREAPVTDFVPAKTQMRLDENAA
NADTTAASEPELVVGEAVNDNLPVVESESEFSRGKYLIYMGGGERCKSMNHYVWGFLCAL
GEAQYLNRTLVMDLNVCLNSRYTSSGKDEERDFRLYFDFEHLKQSASVIDQSQFWTDWGK
WHKKDRLKNHYTEDIKVTPMQLRDVKDTLIMRKFGNVEPDNFWSRVCEGETEAVIKRPWY
LLWKSRRLMEIVSAISSRMDWDFDSVHVVRGEKAQNKQLWPNLDRDTSPDSLLTTLNDKV
GAGRHLYIATNEPDKSFFDPMKGKYRTHFLDDFKDLWDENSEWYTETKELSNGNAVEFDG
YMRVAVDTEVFLRGKRKLETFSDLTRDCKNGVNTCPASS

Transcript Sequence

Transcript ID

Os10t0456400-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:16675641:16677869:1 gene:Os10g0456400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os10t0456400-01);Conserved hypothetical protein. (Os10t0456400-02)
Sequence

ACTCTTCCCCCCTCGCCGCGGCGGCCAGATCCGGGCGGCGGAATGCTGGGCCGGGCGGGG
GCGCTGTCCGCGGCGCGGTGGCGCGGCGGCGCCGGGACCGGGACCGGGATCGGGATCGAC
CTGCGCGCCGCGCTGCGCTCCGGGGGCAACCTCCTCTTCGCGCTCTTCGTGGCGGCCGTC
CTCGCCTTCACCCTCCTCGCCGCGGTCCACAGCCCCGACGACCCGCTCCTCCACCCCTCA
TCGCACCAGCTCACCGCGTTCCTCACCTCCGCCACCTCCAACTCCACCTTCCTCGCCGAC
GACTCCGTCCTCCGCACCGGCGAGGACTTCGCCGCCGCCATCGGCGCCAACTCCTCCGAT
GCCGCCGCCGCCGCGGAGGCCACCGTCGTCGCCGAGGCCGTCCCGTTCATCAAGCTCGAG
GACGTCGCGACCAAGGAGGAGTCGTCGGGGGCGGAGCGGGCCGTCACCGTTGACACCGAC
GCCAGCTCGGACGCGGGCGCCGCGGCGGAGGAGAACCCCATCGTCGAGGCGGTCTCCTGC
GACACGGAGGCGCCGGTGGACTGCACGGGGGACAAGGATCTCTTCAACCTGCTCATGCGC
ACGGCGATCGAGAAGTTCTCCGACCTCCACTTCTACCGCTTCGGCCGCCCCGTCGCCGTG
CCGGGGAGCCCCATGGAGTGCGACCTCGCATGGCGCTTCCGCCCCGCCGAGGACACCAAC
GGCCGCACCACCTACTACAAGGACTACCGCCGCTTCACGCTCACCCGCGACGTCAACACC
TGCAACCTCGTCGTCGGCAATGTGGGCGAGTACCACTCCGGCACCGGCGCCAAGCGCAGC
GGCCGCCGCAAGGGCAAGAAGGGGAAGAAGGGCAAGCGCGAGGCACCGGTCACCGACTTT
GTGCCGGCCAAGACGCAGATGAGGCTCGATGAGAACGCTGCCAATGCAGACACCACGGCC
GCCTCCGAGCCGGAGCTAGTTGTCGGTGAAGCTGTCAATGACAATTTACCGGTGGTCGAA
TCTGAGTCTGAATTCAGCCGCGGAAAGTATCTCATCTACATGGGCGGTGGTGAGAGATGC
AAGAGCATGAACCACTACGTTTGGGGATTCTTGTGTGCACTTGGTGAGGCACAGTACTTG
AACCGGACACTTGTTATGGACCTTAATGTGTGCCTCAATTCACGGTATACTTCAAGTGGC
AAGGATGAAGAGAGAGATTTTAGGCTCTACTTTGATTTTGAGCACTTGAAGCAATCAGCA
TCGGTCATTGACCAGAGCCAGTTCTGGACAGATTGGGGGAAGTGGCACAAGAAGGATAGA
CTGAAGAATCACTACACTGAAGACATCAAGGTGACCCCGATGCAACTTCGTGACGTCAAG
GACACACTGATCATGAGGAAGTTTGGGAATGTTGAGCCTGATAACTTCTGGTCTCGTGTA
TGTGAGGGTGAGACGGAGGCAGTGATCAAGCGCCCATGGTATTTATTGTGGAAATCGCGT
CGATTGATGGAGATCGTGTCTGCCATTTCCTCCCGGATGGATTGGGACTTTGATTCAGTC
CATGTTGTGAGGGGGGAGAAAGCCCAGAACAAACAGTTGTGGCCAAATCTTGATAGAGAT
ACTTCTCCAGATAGTCTCCTTACGACACTTAATGATAAGGTCGGTGCTGGCCGGCATTTG
TACATTGCAACCAATGAACCCGATAAATCATTCTTTGACCCAATGAAGGGTAAGTATCGA
ACACACTTCCTGGATGACTTCAAGGATTTATGGGATGAGAACAGCGAGTGGTACACTGAA
ACAAAGGAGCTGAGCAATGGTAATGCTGTTGAATTCGATGGATACATGAGGGTTGCAGTT
GACACTGAGGTGTTCCTTCGGGGGAAGAGGAAATTGGAGACATTCAGTGATCTTACTCGT
GATTGCAAGAATGGTGTCAATACATGCCCTGCTTCCTCATGAACATCTCGTGAATTATGT
GCGCTGAGTCTCAAATGTTGTGCTTGATATAATATTTTTGAACTACCGTGTATCTTAAGC
ACATATGGCTTTGTTGTAGCTAGCTAGTTCATATGAGTGTTTCTGCAGGACACTGTTGTT
GTATTTTATCACCCAGAACACATTAGTTTGTTGAATTCATGCATCGGCACTTTGTAGTTT
GTACTAATTGCTTAAACAAGAAATTTGCTCAATGTTACCATGTTAAGCCTCTATTCTGAG
GTATTCATC