Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0456100-00
CDS Infomation

cds chromosome:IRGSP-1.0:10:16663932:16664717:1 gene:Os10g0456100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Brn1-like protein. (Os10t0456100-00)
Sequence

ATGGCGGCGCCAGCAGCCAGCGCGCTCCCGCTCGACGGCCGCGTCGCGCTCGTCACCGGC
GGCTCCCGCGGCATCGGCCGCGAGGTGTGCGCCCACCTCGCCTCCCTCGGCGCCCGCGTC
GTCGTCAACTACGCCTCCAACTCCGCCAACGCCGACGCCTTCGCCGCCGACCTCAACTCC
CGCGGCGCCGCCGCCCTCCCGCGCGCCGTGGCGGTGCGCGCCGACGTGTCCGACCCGGCG
GCGGTGCGCGCGCTGTTCGACCGCACGGAGGAGGCGTTCGGCACGCCGCCGCACATCGTC
GTCGCCTGCGCGGGCCTCCTGGAGTCCAAGTACCCGTCGCTGGCCGACACCGCCGTGGAG
GACTTCGACGCCATGCTCGCCGTCAACGTGCGCGGCACGTTCCTGGTGTGCCGCGAGGCG
GCGAACCGCTTCCCGGCGGGGGCGGGGGGCCGCGTCGTGACGTTCTCGTCGTCCATCCTC
GGCACGCTCCTCCCCGGGTACGCGGCGTACACGGCGACGAACGGCGCGGTGGAGGCGATG
ACGAGGATCATGGCGAAGGAGGTGGCGGCGAAGGGGGTGACGGCGAACGTGGTGGCGCCG
GGGCCGGTGAGGACGGAGCTGTTCATGGCGGGGAAGGACGAGGCGTTCGTGAAGAAGGTG
GAGGAGAGGTCGATGGGGCGGATCGCCGAGACGACGGACGTCGCGCCGGTGGTGGCCTTC
CTCGTCAGCGACGCCGCGGCGTGGGTGAACGGCCAGGTCATCCGGGTCAATGGCGGCTTC
GCGTGA

Peptide Sequence

PEP ID

Os10t0456100-00
PEP Infomation

pep chromosome:IRGSP-1.0:10:16663932:16664717:1 gene:Os10g0456100 transcript:Os10t0456100-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Brn1-like protein. (Os10t0456100-00)
Sequence

MAAPAASALPLDGRVALVTGGSRGIGREVCAHLASLGARVVVNYASNSANADAFAADLNS
RGAAALPRAVAVRADVSDPAAVRALFDRTEEAFGTPPHIVVACAGLLESKYPSLADTAVE
DFDAMLAVNVRGTFLVCREAANRFPAGAGGRVVTFSSSILGTLLPGYAAYTATNGAVEAM
TRIMAKEVAAKGVTANVVAPGPVRTELFMAGKDEAFVKKVEERSMGRIAETTDVAPVVAF
LVSDAAAWVNGQVIRVNGGFA

Transcript Sequence

Transcript ID

Os10t0456100-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:16663932:16664717:1 gene:Os10g0456100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Brn1-like protein. (Os10t0456100-00)
Sequence

ATGGCGGCGCCAGCAGCCAGCGCGCTCCCGCTCGACGGCCGCGTCGCGCTCGTCACCGGC
GGCTCCCGCGGCATCGGCCGCGAGGTGTGCGCCCACCTCGCCTCCCTCGGCGCCCGCGTC
GTCGTCAACTACGCCTCCAACTCCGCCAACGCCGACGCCTTCGCCGCCGACCTCAACTCC
CGCGGCGCCGCCGCCCTCCCGCGCGCCGTGGCGGTGCGCGCCGACGTGTCCGACCCGGCG
GCGGTGCGCGCGCTGTTCGACCGCACGGAGGAGGCGTTCGGCACGCCGCCGCACATCGTC
GTCGCCTGCGCGGGCCTCCTGGAGTCCAAGTACCCGTCGCTGGCCGACACCGCCGTGGAG
GACTTCGACGCCATGCTCGCCGTCAACGTGCGCGGCACGTTCCTGGTGTGCCGCGAGGCG
GCGAACCGCTTCCCGGCGGGGGCGGGGGGCCGCGTCGTGACGTTCTCGTCGTCCATCCTC
GGCACGCTCCTCCCCGGGTACGCGGCGTACACGGCGACGAACGGCGCGGTGGAGGCGATG
ACGAGGATCATGGCGAAGGAGGTGGCGGCGAAGGGGGTGACGGCGAACGTGGTGGCGCCG
GGGCCGGTGAGGACGGAGCTGTTCATGGCGGGGAAGGACGAGGCGTTCGTGAAGAAGGTG
GAGGAGAGGTCGATGGGGCGGATCGCCGAGACGACGGACGTCGCGCCGGTGGTGGCCTTC
CTCGTCAGCGACGCCGCGGCGTGGGTGAACGGCCAGGTCATCCGGGTCAATGGCGGCTTC
GCGTGA