Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0442100-00
CDS Infomation

cds chromosome:IRGSP-1.0:10:15885058:15893140:-1 gene:Os10g0442100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Phosphoglycerate kinase. (Os10t0442100-00)
Sequence

GAAGACAAATATTCTTGTATTGATCATTCAACATCATATCTGCACGTGCAATCTGTTAGG
GATTTCCCCATTGAAAAACTCAATGCAGAGGTGGTTCTGGTGCGACTTGATTCCGAACTG
ATCTGTAATCCTCTAGGATCATGTAGTTTGTCGCTGGAAAGGACTGTGTCAACTATCAAA
TACTTGCAAAAAGCTGGAGCAAAAGTGCTTCTGGTCACCAGTTGGACTCCTGTTCTTCAA
TCTGTTTACCCAGTACTCAAGTCAACTGAAACTTTTGCTGACTATATGTCATCGCTTCTT
CAAGTAAAAGTGGTCCCAGTAAATGGTGTGCCTGGTTTAACATCATTTAAGCCAGAAGGG
TGGATGCAGAATGACATTATTTTGTTTGAAAATCTTTTGAACTTCAAAGGAGAAAATGCA
AACTGCAATGATTTTTCTCAGAAGCTCGCTTCAGGTGCTGCAATCTTTGTCAATGATTCT
TTCTCACTGTCTCATAAGATGCTAGCATCTACTGTTGGCATCACTCGCTTCTGCCATGCA
TCCCTTGCTGGTTTCCATTTTGAGGAGGAGCTTATGCAATTGAGAAAGATCACGGACACC
ACAAGGCGCCCATTCATTGCAATAATTGGAGGCAGTAACTTCTTGGGAAAGGCACCTGCT
CTGAATCTGTTAGCCTCTCTATGTGATGGATTATTCTTTGTTGGCAAATTGTCATTGCAA
ATAATGAATGGCTTTGGAATACCAGTGCCCTCTTGTTTTGTAGAAAAGAATTCAACTAAG
GAAGTGCTACAACTTATACAAACAGCTCATAACAGGAATATTCCTATTTATTATCCAACT
GACACCTGGTGTTTGAACAACAAGAACAACAATCATGAAAAGTTGGAAATTCTCGACTCT
GCTGAACTATTGCCTGGCTGGACACCAGCTGATATAGGGCCATCAACATTGGAGAAAATT
TCCTCGTTAATGCCATTATACAAGAAGGTCCTATGGATTGGGCCAACATGTTTTGATTTA
ACAGAAGAGTTTTCTGGTGGGGCAGCACAGTTGGGCAGGATACTGGACAAGGCAAGCCAT
GATAGCTGCGATGTTATTTTAGTGGGGAGTGCAGCATGCAAGGCAGTAAAAGGAATATCA
GGATCATCATCAAAATATACAACATTTAAAAATGCATCTGTTGTTTTGGAATTCCTGAAA
GGAAAAATATTGCCTGGTGTTGCAGCATTGGATAAAAGTTATCCCTATCAGATACCATGG
AATGCTATCTTTTCTGATTCTTCACAACCGTTAGTGGTTGATATTGGAAGTGGAAATGGT
TTATTTCTTTTTCAAATGGCTAGAGACTGGGAAGGCTCCAATTTTCTTGGGCTTGAGATG
AATAAAAAGCTTGTTGTAAGGTGCCTTCGGGATGTTGCTTCAGTTGACAAAAGGAATCTA
TATTTTGTTTCAACAAATGCAACATCCACATTTCGATCAATTGTTTCAAGTTACCCTGGA
CAGTTGGCTCTTGTCACTATACAGTGCCCAAATCCTGATTTCAACAGAGAGCAGAACAGG
TGGAGAATGGTACGAAGAATGCTTGTTGAAGCTATTGCTGATCTTCTTCAGCCCAATGGA
AAGGTTTATCTGCAGTCTGACGTGGAGTCCGTCCTGCTCAGAATGAAAGAGCAGTTCATG
ACGCACGGCAAGGGCCAGCTGGTGGTGGACGACGATGGCGGCGGCGACCACCAGATGGAC
AACCCGTTCGGCGCTGCGTCTGACTGGGAGCGCCATGTGCTGGCTCGTGGAGCTCCCATG
TACAGAACGATGCTACGCAAAGTGTGA

Peptide Sequence

PEP ID

Os10t0442100-00
PEP Infomation

pep chromosome:IRGSP-1.0:10:15885058:15893140:-1 gene:Os10g0442100 transcript:Os10t0442100-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Phosphoglycerate kinase. (Os10t0442100-00)
Sequence

EDKYSCIDHSTSYLHVQSVRDFPIEKLNAEVVLVRLDSELICNPLGSCSLSLERTVSTIK
YLQKAGAKVLLVTSWTPVLQSVYPVLKSTETFADYMSSLLQVKVVPVNGVPGLTSFKPEG
WMQNDIILFENLLNFKGENANCNDFSQKLASGAAIFVNDSFSLSHKMLASTVGITRFCHA
SLAGFHFEEELMQLRKITDTTRRPFIAIIGGSNFLGKAPALNLLASLCDGLFFVGKLSLQ
IMNGFGIPVPSCFVEKNSTKEVLQLIQTAHNRNIPIYYPTDTWCLNNKNNNHEKLEILDS
AELLPGWTPADIGPSTLEKISSLMPLYKKVLWIGPTCFDLTEEFSGGAAQLGRILDKASH
DSCDVILVGSAACKAVKGISGSSSKYTTFKNASVVLEFLKGKILPGVAALDKSYPYQIPW
NAIFSDSSQPLVVDIGSGNGLFLFQMARDWEGSNFLGLEMNKKLVVRCLRDVASVDKRNL
YFVSTNATSTFRSIVSSYPGQLALVTIQCPNPDFNREQNRWRMVRRMLVEAIADLLQPNG
KVYLQSDVESVLLRMKEQFMTHGKGQLVVDDDGGGDHQMDNPFGAASDWERHVLARGAPM
YRTMLRKV

Transcript Sequence

Transcript ID

Os10t0442100-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:15885058:15893140:-1 gene:Os10g0442100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Phosphoglycerate kinase. (Os10t0442100-00)
Sequence

GAAGGACGGCTTGATGCAGAAGGCTTGCAGCGTCCAGTTGTTGAGGCCATCGAGGTCTCG
TCGGCGAGAATCATGGCCACAATCGGGTGGATCCGTGGTTACAGGACGTCCTTGTTACTT
ACGGGGTGAGCTGGAGTAACATGACTAACTCTGTTCTGATTTTCATTCCAATTGTGTTGA
CTCTTAGTTCCATCCTACGGTAGGAAGACAAATATTCTTGTATTGATCATTCAACATCAT
ATCTGCACGTGCAATCTGTTAGGGATTTCCCCATTGAAAAACTCAATGCAGAGGTGGTTC
TGGTGCGACTTGATTCCGAACTGATCTGTAATCCTCTAGGATCATGTAGTTTGTCGCTGG
AAAGGACTGTGTCAACTATCAAATACTTGCAAAAAGCTGGAGCAAAAGTGCTTCTGGTCA
CCAGTTGGACTCCTGTTCTTCAATCTGTTTACCCAGTACTCAAGTCAACTGAAACTTTTG
CTGACTATATGTCATCGCTTCTTCAAGTAAAAGTGGTCCCAGTAAATGGTGTGCCTGGTT
TAACATCATTTAAGCCAGAAGGGTGGATGCAGAATGACATTATTTTGTTTGAAAATCTTT
TGAACTTCAAAGGAGAAAATGCAAACTGCAATGATTTTTCTCAGAAGCTCGCTTCAGGTG
CTGCAATCTTTGTCAATGATTCTTTCTCACTGTCTCATAAGATGCTAGCATCTACTGTTG
GCATCACTCGCTTCTGCCATGCATCCCTTGCTGGTTTCCATTTTGAGGAGGAGCTTATGC
AATTGAGAAAGATCACGGACACCACAAGGCGCCCATTCATTGCAATAATTGGAGGCAGTA
ACTTCTTGGGAAAGGCACCTGCTCTGAATCTGTTAGCCTCTCTATGTGATGGATTATTCT
TTGTTGGCAAATTGTCATTGCAAATAATGAATGGCTTTGGAATACCAGTGCCCTCTTGTT
TTGTAGAAAAGAATTCAACTAAGGAAGTGCTACAACTTATACAAACAGCTCATAACAGGA
ATATTCCTATTTATTATCCAACTGACACCTGGTGTTTGAACAACAAGAACAACAATCATG
AAAAGTTGGAAATTCTCGACTCTGCTGAACTATTGCCTGGCTGGACACCAGCTGATATAG
GGCCATCAACATTGGAGAAAATTTCCTCGTTAATGCCATTATACAAGAAGGTCCTATGGA
TTGGGCCAACATGTTTTGATTTAACAGAAGAGTTTTCTGGTGGGGCAGCACAGTTGGGCA
GGATACTGGACAAGGCAAGCCATGATAGCTGCGATGTTATTTTAGTGGGGAGTGCAGCAT
GCAAGGCAGTAAAAGGAATATCAGGATCATCATCAAAATATACAACATTTAAAAATGCAT
CTGTTGTTTTGGAATTCCTGAAAGGAAAAATATTGCCTGGTGTTGCAGCATTGGATAAAA
GTTATCCCTATCAGATACCATGGAATGCTATCTTTTCTGATTCTTCACAACCGTTAGTGG
TTGATATTGGAAGTGGAAATGGTTTATTTCTTTTTCAAATGGCTAGAGACTGGGAAGGCT
CCAATTTTCTTGGGCTTGAGATGAATAAAAAGCTTGTTGTAAGGTGCCTTCGGGATGTTG
CTTCAGTTGACAAAAGGAATCTATATTTTGTTTCAACAAATGCAACATCCACATTTCGAT
CAATTGTTTCAAGTTACCCTGGACAGTTGGCTCTTGTCACTATACAGTGCCCAAATCCTG
ATTTCAACAGAGAGCAGAACAGGTGGAGAATGGTACGAAGAATGCTTGTTGAAGCTATTG
CTGATCTTCTTCAGCCCAATGGAAAGGTTTATCTGCAGTCTGACGTGGAGTCCGTCCTGC
TCAGAATGAAAGAGCAGTTCATGACGCACGGCAAGGGCCAGCTGGTGGTGGACGACGATG
GCGGCGGCGACCACCAGATGGACAACCCGTTCGGCGCTGCGTCTGACTGGGAGCGCCATG
TGCTGGCTCGTGGAGCTCCCATGTACAGAACGATGCTACGCAAAGTGTGA