Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0439100-00
CDS Infomation

cds chromosome:IRGSP-1.0:10:15751894:15753575:1 gene:Os10g0439100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EXPA27 description:Similar to cDNA clone:002-180-G03, full insert sequence. (Os10t0439100-00)
Sequence

ATGGGCGCCATGGCTGAGAACCTCCTGGTTCTGTGCACCATCCTCGCGGCGCGCATGGCG
CTCGCCGCCGCCGATGATTGGATTCCGGCCACCGCCACGTTCTACGGCGGAAACGACGGC
TCCGGCACCATGGGCGGTGCGTGTGGGTATGGGAACCTGTACGACCAAGGGTACGGCCTC
GAGAACGCGGCGCTGAGCACGGCGCTGTTCAACGACGGCGCGGCGTGCGGGCAGTGCTAC
CTCATCGTGTGCGACACCGACAAGGCCGGGCGGTGGTGCAAGCCGCGGGGCGCGGTGACC
GTGACGGCCACCAACCTGTGCCCGCCCAACTGGGCCCTCCCCAGCGACGGCGGCGGGTGG
TGCAACCCGCCGCGGCGGCACTTCGACATGTCGCAGCCGGCGTGGGAGCGGATCGGCGTC
TACCGCGCCGGGATCGTGCCGGTGCTCTACCGCCGCGTCCGGTGCTGGCGCCGCGGCGGC
GTCCGCTTCACCGTCGGCGGCTTCGACCACTTCGAGCTCGTGCTCGTCGCCAACGTCGCC
GGCAGCGGCTCCGTCGCCGCCGTGTCGGTCAGGGGCGCCGGCACCGGGTGGCTCCAGATG
TCGCGCAACTGGGGGGCCAATTGGCAGTCGCTCGCCGGGCTCGCCGGCCAGCCGCTCAGC
TTCGGCGTCACCACCACCGGCGGCCAGTACATACTGTTCCAGGACGTCGCGCCGGCGGGG
TGGAAGTTCGGCCAGACGTTCTCCACCTCCAAGCAGTTCGACTACTGA

Peptide Sequence

PEP ID

Os10t0439100-00
PEP Infomation

pep chromosome:IRGSP-1.0:10:15751894:15753575:1 gene:Os10g0439100 transcript:Os10t0439100-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EXPA27 description:Similar to cDNA clone:002-180-G03, full insert sequence. (Os10t0439100-00)
Sequence

MGAMAENLLVLCTILAARMALAAADDWIPATATFYGGNDGSGTMGGACGYGNLYDQGYGL
ENAALSTALFNDGAACGQCYLIVCDTDKAGRWCKPRGAVTVTATNLCPPNWALPSDGGGW
CNPPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHFELVLVANVA
GSGSVAAVSVRGAGTGWLQMSRNWGANWQSLAGLAGQPLSFGVTTTGGQYILFQDVAPAG
WKFGQTFSTSKQFDY

Transcript Sequence

Transcript ID

Os10t0439100-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:15751894:15753575:1 gene:Os10g0439100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EXPA27 description:Similar to cDNA clone:002-180-G03, full insert sequence. (Os10t0439100-00)
Sequence

GCACTCAGTAACAACATCAAAATATTCAAGAACTTGTAGTTATTCAGGTCGATCTCTTCC
AGCCTGATCTGTTGTTTGAACGTCGCCATGGGCGCCATGGCTGAGAACCTCCTGGTTCTG
TGCACCATCCTCGCGGCGCGCATGGCGCTCGCCGCCGCCGATGATTGGATTCCGGCCACC
GCCACGTTCTACGGCGGAAACGACGGCTCCGGCACCATGGGCGGTGCGTGTGGGTATGGG
AACCTGTACGACCAAGGGTACGGCCTCGAGAACGCGGCGCTGAGCACGGCGCTGTTCAAC
GACGGCGCGGCGTGCGGGCAGTGCTACCTCATCGTGTGCGACACCGACAAGGCCGGGCGG
TGGTGCAAGCCGCGGGGCGCGGTGACCGTGACGGCCACCAACCTGTGCCCGCCCAACTGG
GCCCTCCCCAGCGACGGCGGCGGGTGGTGCAACCCGCCGCGGCGGCACTTCGACATGTCG
CAGCCGGCGTGGGAGCGGATCGGCGTCTACCGCGCCGGGATCGTGCCGGTGCTCTACCGC
CGCGTCCGGTGCTGGCGCCGCGGCGGCGTCCGCTTCACCGTCGGCGGCTTCGACCACTTC
GAGCTCGTGCTCGTCGCCAACGTCGCCGGCAGCGGCTCCGTCGCCGCCGTGTCGGTCAGG
GGCGCCGGCACCGGGTGGCTCCAGATGTCGCGCAACTGGGGGGCCAATTGGCAGTCGCTC
GCCGGGCTCGCCGGCCAGCCGCTCAGCTTCGGCGTCACCACCACCGGCGGCCAGTACATA
CTGTTCCAGGACGTCGCGCCGGCGGGGTGGAAGTTCGGCCAGACGTTCTCCACCTCCAAG
CAGTTCGACTACTGATACACGGCGACGTACGGACGGCCGGAACATGGCCGGACGACGACG
GTGAGTGCGTGCGTGCGTGCGTGCTCGTGGTTTTGACGGAGCTGCATGCACGCCGCCGCC
ATGACATCCTTGGCATGCCGGAGCCCGGAGGTGCGCGCGACGTAAGATGCCTACGATTTC
GGCTCGTTGGTGTTCTTAATTAATTGCTCTGTTAGCGTCATGCTTAATTTGTTCCTTAAT
TTTGTTAATTATTATTAATTCCATTGCCTATGCATGTAATTTTTTATTAGATGAGTTAAT
GAAATGTTATTAACGAGGC