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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0438800-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:15741865:15742477:1 gene:Os10g0438800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RING-H2 finger protein ATL2E. (Os10t0438800-01)
Sequence

ATGGTGGTGGTGGTGAGCCATGTCATGGCGCTCCTGTCGTCGGCGCTGTCCGGGAAGAAG
GCGGCGGCGGAAGGTGACGGCGACGACGACGGAGGGCAGTGCCGGTGCTGGCGGGACGGC
GACGGCGTCGGCGGCGGGCAGGCGGCGGCGGCGGGGTGCTGCGTGTGCATATCGGGGTTC
AGGGACGGGGAGGAGGTGCGGCGGCTGCCGTGCGGGCACGCGTTCCACCGGGACTGCGTC
GACCGGTGGCTGGCGCTCTACTGCCGGCGGCGGACGTGCCCGCTCTGCCGCCTCCACGTC
GGCGGCGCCGTGGTGGCCGCCGCCGTGGCCGGGCTCGACGAGCTCCAGCTCGGCGACGAC
CTCGTCATCTGGTTCTCCTCCCTCTTCGTCGCCGGTTTCTAG

Peptide Sequence

PEP ID

Os10t0438800-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:15741865:15742477:1 gene:Os10g0438800 transcript:Os10t0438800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RING-H2 finger protein ATL2E. (Os10t0438800-01)
Sequence

MVVVVSHVMALLSSALSGKKAAAEGDGDDDGGQCRCWRDGDGVGGGQAAAAGCCVCISGF
RDGEEVRRLPCGHAFHRDCVDRWLALYCRRRTCPLCRLHVGGAVVAAAVAGLDELQLGDD
LVIWFSSLFVAGF

Transcript Sequence

Transcript ID

Os10t0438800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:15741865:15742477:1 gene:Os10g0438800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RING-H2 finger protein ATL2E. (Os10t0438800-01)
Sequence

ACTCTCGAGTATCGATCGCGTCGCGTTTGATCGATCGAGACGATGGTGGTGGTGGTGAGC
CATGTCATGGCGCTCCTGTCGTCGGCGCTGTCCGGGAAGAAGGCGGCGGCGGAAGGTGAC
GGCGACGACGACGGAGGGCAGTGCCGGTGCTGGCGGGACGGCGACGGCGTCGGCGGCGGG
CAGGCGGCGGCGGCGGGGTGCTGCGTGTGCATATCGGGGTTCAGGGACGGGGAGGAGGTG
CGGCGGCTGCCGTGCGGGCACGCGTTCCACCGGGACTGCGTCGACCGGTGGCTGGCGCTC
TACTGCCGGCGGCGGACGTGCCCGCTCTGCCGCCTCCACGTCGGCGGCGCCGTGGTGGCC
GCCGCCGTGGCCGGGCTCGACGAGCTCCAGCTCGGCGACGACCTCGTCATCTGGTTCTCC
TCCCTCTTCGTCGCCGGTTTCTAGCTTGGTTAATCAGAATCCATCCTAGCTGTTGCCTGC
ATGAGCAATTTGCTCTTTTTTTTAAAAAAAAAGGAAAAAAAACTTTGTTGTTTTCTCCCT
TTCTGCTTCCAGCTTATGAGATGAAATGGCCAATCTCTACCTGTCCTGGTGGTAGAGCAA
AACGGCATGGCAG