Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os10t0437600-00
CDS Infomation	cds chromosome:IRGSP-1.0:10:15673243:15681075:1 gene:Os10g0437600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SOLUBLE STARCH SYNTHASE IIC description:Similar to Starch synthase II, chloroplast precursor (EC 2.4.1.21) (SS II) (GBSSII) (Granule-bound starch synthase II). (Os10t0437600-00)
Sequence	ATGGCGGCGGCGGCCGTCTCCTCCCTCCTCGCCCCTTCGGGATCCTGCTACTCCCCCGGA TGCCACAGCTGCTGGGGTCCCGGGCCCGGAGGCGGGCGGCGCCTACCTTCCCCGCGCCGG CGCCCGATTACCGCCGCGGCTCGCCCTACTTGGGCAGTGCCGAGGAGGAGCAGGTTGGAG TGGGGGCGTGTGGAGGCTCAGAATTCGGGCGCTCGCACCAGCTGCCGAGCAGCACTGCAA TGGCTATCATCCACGGCAAGGTCCCATGTGAATGTTGGTTATGGGTCGCCGCTGGTGTTC CCAGGTTTGACCAAACCGGGGTCAAGCAGGTGTCTATGCGTTGTTGGAATGGTCGGCAAT GCAGGGAATCAAGTTGGTGACGATAGTGATGATGGAATCAAGGTTACCAATGAGAAGCTT CGTGCTGTTATCCGCAAGAGCAAAGAGGTGTTGGAGATCCATCGGAATCTACTTGAGAAG ATATCGGCATCAGAAAGGAAGAAGATCACTTCAATTATAGAGGACAGTTCCATTTATAAT GAGCAAGATCCATTTGGTCAAAGAGATAGTTCTTTTTATCATCTTGATGAAGTTCCAGAC GATGATGAATTTAGCTATGACCTACAGATGTACCTTGATAGACGTCCAGATCAATCTGAA GTTGTTGCAACTCAGGATTATGAGGCACAACTAAGTCAAATAAGTGAAATGGGACAGTCA GTTGCTGAGGGCACTAGTGATGATCCATCTGCTTCAGCTGCTGTAGATCTTATCAATATC ATATTGGTAGCGGCGGAGTGTGCTCCTTGGTCCAAAACAGGTGGGCTTGGAGATGTTGCT GGAGCTTTGCCAAAGGCTTTGGCTAGGAGAGGTCACCGTGTCATGGTAGTAGTGCCAATG TATAAAAACTACGCAGAACCTCAACAGCTAGGAGAGCCAAGGAGATACCAGGTTGCAGGG CAGGATATGGAGGTAATTTATTATCATGCATACATAGATGGTGTGGATTTTGTTTTCATT GACAATCCTATCTTCCACCACGTTGAGAATGACATTTATGGCGGAGACCGAACAGACATC TTAAAACGGATGGTTTTGTTGTGCAAAGCGGCTATAGAGGTTCCATGGTATGTTCCTTGT GGTGGCTACTGCTACGGTGATGGAAATCTTGTGTTCCTTGCAAATGATTGGCATACTGCA CTACTGCCTGTTTATTTGAAGGCATACTATCATGACAATGGTTTCATGATATATGCCCGT TCTGTTCTTGTCATACACAATATAGCACATCAGGGTCGTGGCCCATTAGATGACTTCAGT TATCTGGATTTGCCAGTTGATTACATGGATCTTTTCAAACTTTATGACCCATTTGGGGGT GATCACCTAAACATATTTGCAGCTGGTATTAAAGCTGCTGACCGTTTGCTTACTGTAAGC CATGGTTATGCATGGGAGCTCAAAACAGCTGAAGGTGGTTGGGGTCTTCATGGGATCATC AATGAAAGCGATTGGAAATTTCAGGGCATTGTAAATGGCATTGATACAACTGATTGGAAT CCTAGGTGTGATATCCACCTAAAATCTGATGGGTACACCAATTATTCTCTAGAAACAGTT CAGGCAGGTAAACAGCAATGTAAGGCAGCATTGCAGAAGGAACTTGGTCTCCCAGTTCGT GGCGATGTTCCTGTCATTGCTTTCATTGGACGGCTAGACCATCAAAAAGGTGTAGACCTT ATAGCAGAAGCAATGCCATGGATTGCTGGCCAAGATGTACAGTTAATAATGTTGGGCACT GGACGGCAAGACCTCGAAGATACATTGAGGAGGCTTGAGAGCCAACATTACGATAGAGTT AGGGGGTGGGTTGGTTTTTCCATCAGGTTGGCTCATCGAATGACAGCAGGGGCTGATATA CTATTGATGCCATCAAGGTTTGAGCCATGTGGATTGAATCAGCTCTATGCCATGATGTAT GGGACTGTCCCAGTAGTCCATGCGGTCGGTGGTCTTCGAGACACCGTTGAGCACTACAAT CCCTACGAGGAGTCCGGACTTGGTTGGACTTTTGAAAAGGCAGAGGCAAACAGACTGATT GATGCTCTAGGGCACTGCTTGAACACGTACAGGAACTACAGGACTAGTTGGGAGGGACTC CAAAAGAGAGGGATGATGCAAGATCTAAGTTGGGATAATGCTGCTAAGCTGTATGAGGAA GTCCTCCTAGCTGCCAAGTATCAATGGTGA

Peptide Sequence

PEP ID	Os10t0437600-00
PEP Infomation	pep chromosome:IRGSP-1.0:10:15673243:15681075:1 gene:Os10g0437600 transcript:Os10t0437600-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SOLUBLE STARCH SYNTHASE IIC description:Similar to Starch synthase II, chloroplast precursor (EC 2.4.1.21) (SS II) (GBSSII) (Granule-bound starch synthase II). (Os10t0437600-00)
Sequence	MAAAAVSSLLAPSGSCYSPGCHSCWGPGPGGGRRLPSPRRRPITAAARPTWAVPRRSRLE WGRVEAQNSGARTSCRAALQWLSSTARSHVNVGYGSPLVFPGLTKPGSSRCLCVVGMVGN AGNQVGDDSDDGIKVTNEKLRAVIRKSKEVLEIHRNLLEKISASERKKITSIIEDSSIYN EQDPFGQRDSSFYHLDEVPDDDEFSYDLQMYLDRRPDQSEVVATQDYEAQLSQISEMGQS VAEGTSDDPSASAAVDLINIILVAAECAPWSKTGGLGDVAGALPKALARRGHRVMVVVPM YKNYAEPQQLGEPRRYQVAGQDMEVIYYHAYIDGVDFVFIDNPIFHHVENDIYGGDRTDI LKRMVLLCKAAIEVPWYVPCGGYCYGDGNLVFLANDWHTALLPVYLKAYYHDNGFMIYAR SVLVIHNIAHQGRGPLDDFSYLDLPVDYMDLFKLYDPFGGDHLNIFAAGIKAADRLLTVS HGYAWELKTAEGGWGLHGIINESDWKFQGIVNGIDTTDWNPRCDIHLKSDGYTNYSLETV QAGKQQCKAALQKELGLPVRGDVPVIAFIGRLDHQKGVDLIAEAMPWIAGQDVQLIMLGT GRQDLEDTLRRLESQHYDRVRGWVGFSIRLAHRMTAGADILLMPSRFEPCGLNQLYAMMY GTVPVVHAVGGLRDTVEHYNPYEESGLGWTFEKAEANRLIDALGHCLNTYRNYRTSWEGL QKRGMMQDLSWDNAAKLYEEVLLAAKYQW

Transcript Sequence

Transcript ID	Os10t0437600-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:10:15673243:15681075:1 gene:Os10g0437600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SOLUBLE STARCH SYNTHASE IIC description:Similar to Starch synthase II, chloroplast precursor (EC 2.4.1.21) (SS II) (GBSSII) (Granule-bound starch synthase II). (Os10t0437600-00)
Sequence	CCGCGGGAGGAGGGCTCGCCGATTCCACTACTTCACTCCAGTAGGTGGCCAACGCGCGGG GTGGGAGCAGCAGCGACGACCTCCAATGGCGGCGGCGGCCGTCTCCTCCCTCCTCGCCCC TTCGGGATCCTGCTACTCCCCCGGATGCCACAGCTGCTGGGGTCCCGGGCCCGGAGGCGG GCGGCGCCTACCTTCCCCGCGCCGGCGCCCGATTACCGCCGCGGCTCGCCCTACTTGGGC AGTGCCGAGGAGGAGCAGGTTGGAGTGGGGGCGTGTGGAGGCTCAGAATTCGGGCGCTCG CACCAGCTGCCGAGCAGCACTGCAATGGCTATCATCCACGGCAAGGTCCCATGTGAATGT TGGTTATGGGTCGCCGCTGGTGTTCCCAGGTTTGACCAAACCGGGGTCAAGCAGGTGTCT ATGCGTTGTTGGAATGGTCGGCAATGCAGGGAATCAAGTTGGTGACGATAGTGATGATGG AATCAAGGTTACCAATGAGAAGCTTCGTGCTGTTATCCGCAAGAGCAAAGAGGTGTTGGA GATCCATCGGAATCTACTTGAGAAGATATCGGCATCAGAAAGGAAGAAGATCACTTCAAT TATAGAGGACAGTTCCATTTATAATGAGCAAGATCCATTTGGTCAAAGAGATAGTTCTTT TTATCATCTTGATGAAGTTCCAGACGATGATGAATTTAGCTATGACCTACAGATGTACCT TGATAGACGTCCAGATCAATCTGAAGTTGTTGCAACTCAGGATTATGAGGCACAACTAAG TCAAATAAGTGAAATGGGACAGTCAGTTGCTGAGGGCACTAGTGATGATCCATCTGCTTC AGCTGCTGTAGATCTTATCAATATCATATTGGTAGCGGCGGAGTGTGCTCCTTGGTCCAA AACAGGTGGGCTTGGAGATGTTGCTGGAGCTTTGCCAAAGGCTTTGGCTAGGAGAGGTCA CCGTGTCATGGTAGTAGTGCCAATGTATAAAAACTACGCAGAACCTCAACAGCTAGGAGA GCCAAGGAGATACCAGGTTGCAGGGCAGGATATGGAGGTAATTTATTATCATGCATACAT AGATGGTGTGGATTTTGTTTTCATTGACAATCCTATCTTCCACCACGTTGAGAATGACAT TTATGGCGGAGACCGAACAGACATCTTAAAACGGATGGTTTTGTTGTGCAAAGCGGCTAT AGAGGTTCCATGGTATGTTCCTTGTGGTGGCTACTGCTACGGTGATGGAAATCTTGTGTT CCTTGCAAATGATTGGCATACTGCACTACTGCCTGTTTATTTGAAGGCATACTATCATGA CAATGGTTTCATGATATATGCCCGTTCTGTTCTTGTCATACACAATATAGCACATCAGGG TCGTGGCCCATTAGATGACTTCAGTTATCTGGATTTGCCAGTTGATTACATGGATCTTTT CAAACTTTATGACCCATTTGGGGGTGATCACCTAAACATATTTGCAGCTGGTATTAAAGC TGCTGACCGTTTGCTTACTGTAAGCCATGGTTATGCATGGGAGCTCAAAACAGCTGAAGG TGGTTGGGGTCTTCATGGGATCATCAATGAAAGCGATTGGAAATTTCAGGGCATTGTAAA TGGCATTGATACAACTGATTGGAATCCTAGGTGTGATATCCACCTAAAATCTGATGGGTA CACCAATTATTCTCTAGAAACAGTTCAGGCAGGTAAACAGCAATGTAAGGCAGCATTGCA GAAGGAACTTGGTCTCCCAGTTCGTGGCGATGTTCCTGTCATTGCTTTCATTGGACGGCT AGACCATCAAAAAGGTGTAGACCTTATAGCAGAAGCAATGCCATGGATTGCTGGCCAAGA TGTACAGTTAATAATGTTGGGCACTGGACGGCAAGACCTCGAAGATACATTGAGGAGGCT TGAGAGCCAACATTACGATAGAGTTAGGGGGTGGGTTGGTTTTTCCATCAGGTTGGCTCA TCGAATGACAGCAGGGGCTGATATACTATTGATGCCATCAAGGTTTGAGCCATGTGGATT GAATCAGCTCTATGCCATGATGTATGGGACTGTCCCAGTAGTCCATGCGGTCGGTGGTCT TCGAGACACCGTTGAGCACTACAATCCCTACGAGGAGTCCGGACTTGGTTGGACTTTTGA AAAGGCAGAGGCAAACAGACTGATTGATGCTCTAGGGCACTGCTTGAACACGTACAGGAA CTACAGGACTAGTTGGGAGGGACTCCAAAAGAGAGGGATGATGCAAGATCTAAGTTGGGA TAATGCTGCTAAGCTGTATGAGGAAGTCCTCCTAGCTGCCAAGTATCAATGGTGATCAGT CCAAGAAGACCTCGACGGTTGTTCAGTCATTCATGACCGAAATGCCTTTTTCTCGTGTCA GCTGCTCAGATGCGGCCACCATCTAGTTCCATGGCTTACATCTTCCTGTGATTTGGATGA ACAGAGTTTTTTTGTCAGATCTGACATCATTTTCAAGAAGGCACATGATGAACCTACTTC CCAGGTGAATACAGCAGCGGACGATGCCTTTGTTGGAAGGTGGCAAAACACATGGAAGAT TCAGCCGTCTGCCAGCATGCACCTCTGTCCTAAGGAGAGGCTCCAAGCCCCATTGTGCGC TCTGGAGAGGCTCCAAACCACCATTGTTCGCCCCTGGGTAGGTTGTTGAGCTCGGTTAGA TGCTTTTAGTACAGTAGAATAGCAGATACTAGCGGATAGACTAGTTGATATTTCCCCTAT GCACCGAGTGGTTCGGTTGTACCTTATTTTTTTCTTGGCTCTTGTTGTCCAGTTCTTCGA TCTTTAGACGATTAGCGTCCCGGGATTTCCCAGATGACATTGACATTGATACTAGTGGGA ATTTCCCCTGCAAATTTACTGTC